Basic Information
Locus ID:
Ah000813
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
pentatricopeptide repeat-containing protein At1g74400
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 7997779 | 8002243 | + | Ah000813 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 95,996.26 Da | 37.56 | 95.41 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 671 | 698 | 1.2 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 270 | 302 | 9.1E-6 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 134 | 182 | 1.1E-12 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 204 | 253 | 2.9E-14 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 598 | 620 | 0.0029 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 711 | 733 | 0.089 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 526 | 551 | 0.022 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 627 | 654 | 9.4E-5 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 320 | 650 | 4.4E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 423 | 582 | 1.9E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 583 | 661 | 4.3E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 11 | 197 | 4.2E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 198 | 268 | 5.5E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 662 | 815 | 8.7E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 269 | 344 | 3.9E-12 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 242 | 276 | 1.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 172 | 206 | 2.9E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 138 | 171 | 1.9E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 277 | 306 | 3.3E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 207 | 240 | 1.3E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 525 | 558 | 1.6E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 240 | 274 | 10.742131 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 135 | 169 | 12.342482 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 170 | 204 | 12.550746 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 205 | 239 | 11.509422 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 275 | 309 | 9.339086 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 594 | 628 | 8.70333 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 523 | 557 | 9.45966 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74400.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021733872.1 | putative pentatricopeptide repeat-containing protein At1g74400 [Chenopodium quinoa] | 0 |
| Q9CA73 | Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E68 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803L9A5 | Pentatricopeptide repeat-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13806 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000813 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114330 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004662 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54733, Sgl60034 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0021740 |
| Apiaceae | Apium graveolens | 1 | Ag4G00372 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G002100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714846 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G10467 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018864m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g29560.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g047950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1743 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1920 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05480 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2665, evm.TU.LG14.1799 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11930 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632922 |
| Solanaceae | Solanum chilense | 1 | SOLCI000669400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012932 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10188 |
| Zosteraceae | Zostera marina | 1 | Zosma06g09680.v3.1 |