Basic Information
Locus ID:
Ah000710
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Ras GTPase-activating protein-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 6801358 | 6809706 | - | Ah000710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 51,932.01 Da | 53.72 | 67.34 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00780 | NTF2 | 34 | 156 | 1.99666E-47 | IPR018222 |
| CDD | cd00590 | RRM_SF | 326 | 383 | 7.65045E-13 | - |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 38 | 154 | 5.2E-29 | IPR002075 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 326 | 383 | 3.3E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 294 | 405 | 3.76E-17 | IPR035979 |
| SUPERFAMILY | SSF54427 | NTF2-like | 34 | 155 | 2.53E-38 | IPR032710 |
| Gene3D | G3DSA:3.30.70.330 | - | 277 | 405 | 3.2E-16 | IPR012677 |
| Gene3D | G3DSA:3.10.450.50 | - | 27 | 157 | 2.6E-38 | - |
| SMART | SM00360 | rrm1_1 | 325 | 396 | 2.0E-13 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 324 | 400 | 13.054941 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 38 | 154 | 32.609985 | IPR018222 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 321 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60980.1 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_021733999.1 | ras GTPase-activating protein-binding protein 1-like [Chenopodium quinoa] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L9K7 | G3BP-like protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology