Basic Information
Locus ID:
Ah000678
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 6566802 | 6569431 | + | Ah000678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 47,728.10 Da | 47.32 | 78.58 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 52 | 1.8E-9 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 229 | 314 | 1.7E-5 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 84 | 1.44E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 66 | 9.6E-7 | - |
| SMART | SM00256 | fbox_2 | 16 | 56 | 1.7E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 114 | 317 | 8.7E-18 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 407 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08750.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021718981.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| Q9C9Y4 | F-box protein At3g08750 OS=Arabidopsis thaliana OX=3702 GN=At3g08750 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RRS4 | FBA_3 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_035740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 29 | gene_12224, gene_12225, gene_12226, gene_12227, gene_12228 ... |
| Amaranthaceae | Atriplex hortensis | 24 | Ah000678, Ah000681, Ah000683, Ah000684, Ah000689, Ah000693 ... |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g116570 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg21175, Sbi_jg22628, Sbi_jg30470, Sbi_jg30490 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg16516, Seu_jg28633, Seu_jg28651 |
| Amaranthaceae | Suaeda aralocaspica | 5 | GOSA_00014232, GOSA_00014233, GOSA_00014978, GOSA_00014983 ... |
| Amaranthaceae | Suaeda glauca | 31 | Sgl01161, Sgl01173, Sgl06260, Sgl10884, Sgl12033, Sgl12232 ... |
| Amaranthaceae | Chenopodium album | 18 | gene:ENSEOMG00000005540, gene:ENSEOMG00000005896 ... |
| Amaranthaceae | Chenopodium quinoa | 23 | CQ.Regalona.r1.1AG0004930, CQ.Regalona.r1.5AG0021990 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10874, Lb3G17282 |
| Portulacaceae | Portulaca oleracea | 15 | evm.TU.LG01.2534, evm.TU.LG01.2535, evm.TU.LG01.2536 ... |