Basic Information
Locus ID:
Ah000637
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 6183463 | 6184123 | + | Ah000637 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 11,407.58 Da | 71.77 | 126.80 | 0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 9 | 52 | 1.5E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 57 | 2.22E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 89 | 2.1E-8 | - |
| SMART | SM00256 | fbox_2 | 11 | 51 | 4.3E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 51 | 10.954661 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02240.1 | F-box family protein. | 0 |
| RefSeq | XP_021839008.1 | F-box protein PP2-B11-like [Spinacia oleracea] | 0 |
| Q570N1 | F-box protein PP2-B3 OS=Arabidopsis thaliana OX=3702 GN=PP2B3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5E4FE41 | PREDICTED: F-box OS=Prunus dulcis OX=3755 GN=ALMOND_2B011002 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19528 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah000637, Ah000638, Ah000640, Ah000641 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g116860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30511, Sbi_jg58736 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28606 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014960 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55244, Sgl60504 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007243, gene:ENSEOMG00000022548 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0022820, CQ.Regalona.r1.5BG0024210 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.919, evm.TU.LG09.1052, evm.TU.LG26.945 |