Basic Information
Locus ID:
Ah000399
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Clathrin interactor EPSIN
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 3919162 | 3920552 | - | Ah000399 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 46,897.51 Da | 58.28 | 86.49 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 158 | 263 | 2.8E-5 | IPR006527 |
| Pfam | PF00646 | F-box domain | 9 | 46 | 4.0E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 227 | 1.83E-15 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 55 | 283 | 1.7E-8 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 42 | 5.2E-8 | - |
| SMART | SM00256 | fbox_2 | 6 | 46 | 2.9E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 69 | 271 | 1.7E-21 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 357 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_048500434.1 | F-box protein CPR1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S2W9 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_000730 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 13 | Ah000393, Ah000394, Ah000399, Ah003949, Ah003953, Ah003954 ... |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g071880, BVRB_5g113260 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg11627, Sbi_jg45701, Sbi_jg46774, Sbi_jg46778 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg10869, Seu_jg18452, Seu_jg20876, Seu_jg20880 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001449, GOSA_00014071 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl33340, Sgl38687, Sgl45685, Sgl50446, Sgl67624, Sgl67625 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000006113, gene:ENSEOMG00000027208 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4BG0011210, CQ.Regalona.r1.4BG0011390 ... |