Basic Information
Locus ID:
Ah000265
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 2637903 | 2639051 | + | Ah000265 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 42,718.99 Da | 42.66 | 100.78 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 74 | 95 | 0.053 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 253 | 274 | 0.09 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 302 | 325 | 1.9 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 65 | 347 | 9.42E-41 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 38 | 2.3E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 198 | 373 | 4.3E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 125 | 197 | 5.8E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 39 | 124 | 1.2E-10 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 150 | 175 | 0.0085 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 176 | 201 | 560.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 303 | 328 | 26.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 329 | 354 | 290.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 73 | 98 | 3.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 125 | 149 | 0.0023 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 124 | 4.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 251 | 276 | 0.63 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07550.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_021733445.1 | F-box/LRR-repeat protein 12-like [Chenopodium quinoa] | 0 |
| Q9SRR1 | F-box/LRR-repeat protein 12 OS=Arabidopsis thaliana OX=3702 GN=FBL12 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L862 | F-box/LRR-repeat protein 12 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16746 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13578 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000265 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30704, Sbi_jg58568 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28427 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004993 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55038, Sgl60294 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007060, gene:ENSEOMG00000020144 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5AG0024680 |
| Apiaceae | Apium graveolens | 1 | Ag9G01626 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714985 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.504.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G11816 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G07550.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020882m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g06470.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g056400.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g02140 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g11670 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.2347, evm.TU.LG04.2348 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036649 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23814, Lb4G23861 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0677150, gene-QOZ80_9BG0700830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0343680.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064021 |
| Poaceae | Oryza coarctata | 2 | Oco21G004040, Oco22G004890 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g16280.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G110700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104026 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G019520, Chr31G002450 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G135500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG036440, gene_TRIDC4BG013290 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G230600.2, TraesCS4B02G085300.2 ... |
| Poaceae | Zea mays | 5 | Zm00001eb048880_P001, Zm00001eb112540_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-54580 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17701, Zma_g17702 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2365, evm.TU.LG14.1535, evm.TU.LG14.1536 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g06060 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1682, evm.TU.Scaffold_9_RagTag.1478 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-20632 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21469 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.929 |
| Rhizophoraceae | Rhizophora apiculata | 9 | nbisL1-mrna-13915, nbisL1-mrna-18050, nbisL1-mrna-19630 ... |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9058 |
| Salicaceae | Populus euphratica | 3 | populus_peu24252, populus_peu24264, populus_peu26825 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605746, gene-LOC132605747 |
| Solanaceae | Solanum chilense | 1 | SOLCI005888300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023118 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.2293_chr01_-, gene_16489 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0898 |