halophFGD

Basic Information

Locus ID: Ah000105

Species & Taxonomic ID: Atriplex hortensis & 34272

Genome Assembly: Atriplex hortensis v2.0

Description: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Scaffold_552_HRSCAF_710	855698	865885	+	Ah000105

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.55	113,010.56 Da	42.65	77.25	-0.55

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd10519	SET_EZH	867	983	1.9432E-69	-
Pfam	PF00856	SET domain	878	981	5.3E-13	IPR001214
Pfam	PF05158	RNA polymerase Rpc34 subunit	22	130	2.1E-23	IPR007832
SUPERFAMILY	SSF46785	Winged helix DNA-binding domain	21	90	1.71E-9	IPR036390
SUPERFAMILY	SSF82199	SET domain	855	984	1.15E-40	-
Gene3D	G3DSA:2.170.270.10	SET domain	708	984	4.6E-46	-
Gene3D	G3DSA:1.10.10.10	-	16	82	8.5E-15	IPR036388
SMART	SM00717	sant	389	439	1.1	IPR001005
SMART	SM00317	set_7	867	988	1.7E-34	IPR001214
SMART	SM00717	sant	673	723	0.23	IPR001005
ProSiteProfiles	PS50280	SET domain profile.	867	982	14.447678	IPR001214
MobiDBLite	mobidb-lite	consensus disorder prediction	549	565	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	990	1018	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	758	772	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	549	626	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	730	748	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	730	786	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	22	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	995	1011	-	-

Gene Ontology

Biological Process:

GO:0006383 (transcription by RNA polymerase III)

Molecular Function:

GO:0005515 (protein binding)

Cellular Component:

GO:0005666 (RNA polymerase III complex)

KEGG Pathway

KO Term:

K03025 (DNA-directed RNA polymerase III subunit RPC6)

Pathway:

ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00240 (Pyrimidine metabolism) map00240 (Pyrimidine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko03020 (RNA polymerase) map03020 (RNA polymerase) map04623 (Cytosolic DNA-sensing pathway)

Reaction:

R00435 (ATP + RNA <=> Diphosphate + RNA) R00441 (GTP + RNA <=> Diphosphate + RNA) R00442 (CTP + RNA <=> Diphosphate + RNA) R00443 (UTP + RNA <=> Diphosphate + RNA)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G02020.1	SET domain-containing protein. Encodes a polycomb group protein. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA in controlling seed initiation by helping to suppress central cell nucleusendosperm proliferation within the FG.
RefSeq	XP_021768738.1	histone-lysine N-methyltransferase EZA1 [Chenopodium quinoa]
Swiss-Prot	Q9ZSM8	Histone-lysine N-methyltransferase EZA1 OS=Arabidopsis thaliana OX=3702 GN=EZA1 PE=1 SV=1
TrEMBL	A0A0K9R519	[histone H3]-lysine(27) N-trimethyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_112330 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35113, jg40015
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15041, gene_19265
Amaranthaceae	Atriplex hortensis	4	Ah000105, Ah004342, Ah005404, Ah005405
Amaranthaceae	Beta vulgaris	2	BVRB_5g106820, BVRB_5g121850
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg24543, Sbi_jg31326, Sbi_jg57960, Sbi_jg8391
Amaranthaceae	Salicornia europaea	2	Seu_jg11656, Seu_jg25585
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004473, GOSA_00010875
Amaranthaceae	Suaeda glauca	4	Sgl51274, Sgl54528, Sgl56576, Sgl59869
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000005614, gene:ENSEOMG00000007252 ... gene:ENSEOMG00000021857, gene:ENSEOMG00000021878, gene:ENSEOMG00000023549, gene:ENSEOMG00000024022, gene:ENSEOMG00000024435
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0002010, CQ.Regalona.r1.5AG0027020 ... CQ.Regalona.r1.5BG0002130, CQ.Regalona.r1.5BG0028620
Anacardiaceae	Pistacia vera	2	pistato.v30008100, pistato.v30206130
Apiaceae	Apium graveolens	4	Ag4G01104, Ag5G00291, Ag5G02886, Ag9G02327
Arecaceae	Cocos nucifera	3	COCNU_08G005060, COCNU_11G000180, COCNU_16G004410
Arecaceae	Phoenix dactylifera	3	gene-LOC103696622, gene-LOC103713764, gene-LOC103724029
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.1673.V1.1, AsparagusV1_08.1457.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G00317, Ftri15G03347, Ftri17G16197, Ftri18G17065
Brassicaceae	Arabidopsis thaliana	2	AT2G23380.1, AT4G02020.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000037m.g.v1.0, Thhalv10028423m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g02390.v2.2, Sp6g01900.v2.2
Brassicaceae	Brassica nigra	2	BniB01g020410.2N, BniB08g044480.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq05G1333, Ceq06G1050
Casuarinaceae	Casuarina glauca	2	Cgl05G1338, Cgl06G1092
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno15g06510, gene.Cymno18g03860
Dunaliellaceae	Dunaliella salina	1	Dusal.0011s00040.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g09320, gene.Thate05g09090
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2109, evm.TU.LG04.450
Plantaginaceae	Plantago ovata	3	Pov_00024947, Pov_00029191, Pov_00029199
Plumbaginaceae	Limonium bicolor	3	Lb8G36103, Lb8G36104, Lb8G36105
Poaceae	Echinochloa crus-galli	6	AH01.3875, AH06.370, BH01.4213, BH06.488, CH01.4500 ... CH06.489
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_3AG0245610, gene-QOZ80_3AG0245620 ... gene-QOZ80_3BG0282500, gene-QOZ80_6AG0510020, gene-QOZ80_6BG0462170
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0382250.1, HORVU.MOREX.r3.7HG0655900.1 ... HORVU.MOREX.r3.7HG0655960.1
Poaceae	Lolium multiflorum	3	gene-QYE76_028415, gene-QYE76_063025, gene-QYE76_068467
Poaceae	Oryza coarctata	3	Oco06G014810, Oco11G007280, Oco12G007370
Poaceae	Oryza sativa	2	LOC_Os03g19480.1, LOC_Os06g16390.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G377500, gene-BS78_10G055000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102572, Pt_Chr0105706, Pt_Chr0402067, Pt_Chr0402103
Poaceae	Sporobolus alterniflorus	6	Chr01G032910, Chr04G009580, Chr11G022110, Chr12G006670 ... Chr14G002360, Chr21G001470
Poaceae	Thinopyrum elongatum	3	Tel4E01G329400, Tel7E01G260300, Tel7E01G260700
Poaceae	Triticum dicoccoides	5	gene_TRIDC4AG017090, gene_TRIDC4BG031660 ... gene_TRIDC7AG014970, gene_TRIDC7AG015060, gene_TRIDC7BG004320
Poaceae	Triticum aestivum	9	TraesCS4A02G121300.4, TraesCS4B02G181400.3 ... TraesCS4D02G184600.3, TraesCS7A02G128300.1, TraesCS7A02G128600.1, TraesCS7B02G028200.2, TraesCS7B02G028500.2, TraesCS7D02G127100.2, TraesCS7D02G127400.1
Poaceae	Zea mays	3	Zm00001eb014730_P001, Zm00001eb271490_P005 ... Zm00001eb396070_P002
Poaceae	Zoysia japonica	2	nbis-gene-3518, nbis-gene-5096
Poaceae	Zoysia macrostachya	2	Zma_g29163, Zma_g3769
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.1253, evm.TU.LG09.719, evm.TU.LG10.688 ... evm.TU.LG17.699
Posidoniaceae	Posidonia oceanica	2	gene.Posoc07g04650, gene.Posoc07g12580
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_6_RagTag.1859, evm.TU.Scaffold_9_RagTag.749
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-17281, nbisL1-mrna-21472
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-20015, nbisL1-mrna-8423
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11917, nbisL1-mrna-18542
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.629, evm.TU.utg000011l.1134
Rhizophoraceae	Kandelia obovata	2	Maker00007791, Maker00009601
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15493, nbisL1-mrna-1612
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-3234, nbisL1-mrna-5293
Salicaceae	Populus euphratica	4	populus_peu14405, populus_peu23376, populus_peu27351 ... populus_peu31334
Solanaceae	Lycium barbarum	3	gene-LOC132616927, gene-LOC132623421, gene-LOC132644930
Solanaceae	Solanum chilense	3	SOLCI000735100, SOLCI000869500, SOLCI001076900
Solanaceae	Solanum pennellii	3	gene-LOC107001506, gene-LOC107011481, gene-LOC107014997
Tamaricaceae	Reaumuria soongarica	2	gene_17331, gene_3847
Tamaricaceae	Tamarix chinensis	3	TC04G1756, TC07G1795, TC07G2777
Zosteraceae	Zostera marina	2	Zosma02g18570.v3.1, Zosma05g30470.v3.1