Basic Information
Locus ID:
Ah000037
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 313158 | 316325 | + | Ah000037 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 51,298.83 Da | 53.61 | 72.23 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 111 | 428 | 1.1E-87 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 66 | 461 | 3.41E-127 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 62 | 458 | 8.6E-119 | IPR012334 |
| SMART | SM00710 | pbh1 | 241 | 267 | 37.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 321 | 342 | 180.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 291 | 311 | 2700.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 350 | 371 | 1600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 268 | 289 | 550.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 298 | 311 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021768653.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M7B2 | Polygalacturonase At1g80170 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology