Basic Information
Locus ID:
AgUnG01614
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RAVE protein 1 C terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg9207 | 12253 | 12786 | + | AgUnG01614 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 20,401.10 Da | 47.61 | 97.51 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017233891.1 | PREDICTED: uncharacterized protein LOC108207950 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5B716 | E3 ubiquitin-protein ligase OS=Apium graveolens OX=4045 GN=AG4045_002530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.74547 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.52774 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.958995 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.755571 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.899183 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.150212 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.26346 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.483645 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 5.055851 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.537895 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.057534 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.005948 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.939097 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.426698 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.152653 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.274834 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.189636 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.108106 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.215282 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.96475 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.791776 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.053037 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.735535 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.051447 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.177586 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.152323 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.547813 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.537364 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.976642 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.835686 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.906657 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.742984 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.034075 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.031039 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.813246 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.15161 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.873645 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.50152 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.732534 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.754825 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.967089 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.715355 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.50017 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.85352 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.961195 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.853293 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.346189 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.260689 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.978412 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.783646 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg29472, jg29473 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23522 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022830 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g002820 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg3912, Sbi_jg49135 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6105 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000609 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10879, Sgl16234 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014876, gene:ENSEOMG00000035105 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2BG0026440 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30005980 |
| Apiaceae | Apium graveolens | 8 | Ag6G00230, AgUnG01610, AgUnG01611, AgUnG01612, AgUnG01613 ... |
| Arecaceae | Cocos nucifera | 1 | scaffold017018G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713736 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2062.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G00244 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G46560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001279m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g28610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniS02554g070.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1314 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1468 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g04090 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0182s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g23500, gene.Thate08g18210, gene.Thate09g08140 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.679 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00017990 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31423 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2003, BH02.2050, CH02.2223 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0265040.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053283 |
| Poaceae | Oryza coarctata | 2 | Oco01G012480, Oco02G012610 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g37120.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G163200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603024 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G017930, Chr05G016080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G348500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG029450, gene_TRIDC3BG032680 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G201200.1, TraesCS3B02G224700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb356500_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47370 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2136, evm.TU.LG06.180 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g04810 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.616 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21599 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9620 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7415, nbisL1-mrna-7420 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.198 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017714 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1695 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5422 |
| Salicaceae | Populus euphratica | 2 | populus_peu31535, populus_peu31536 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645419 |
| Solanaceae | Solanum chilense | 1 | SOLCI000592400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003069 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_716 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1995 |
| Zosteraceae | Zostera marina | 1 | Zosma05g12540.v3.1 |