Basic Information
Locus ID:
AgUnG01489
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Forkhead-associated domain-containing protein FHA domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg83 | 65963 | 72821 | - | AgUnG01489 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 107,348.94 Da | 50.34 | 87.17 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09123 | PLDc_Tdp1_2 | 670 | 860 | 8.32218E-34 | - |
| CDD | cd09122 | PLDc_Tdp1_1 | 274 | 441 | 1.10312E-35 | - |
| Pfam | PF06087 | Tyrosyl-DNA phosphodiesterase | 644 | 897 | 5.6E-23 | IPR010347 |
| Pfam | PF06087 | Tyrosyl-DNA phosphodiesterase | 258 | 481 | 2.2E-20 | IPR010347 |
| Pfam | PF08797 | HIRAN domain | 509 | 636 | 7.9E-16 | IPR014905 |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 253 | 466 | 5.65E-36 | - |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 658 | 915 | 1.69E-40 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 653 | 916 | 2.8E-45 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 250 | 466 | 3.0E-52 | - |
| Gene3D | G3DSA:3.30.70.2330 | - | 505 | 640 | 1.1E-9 | - |
| SMART | SM00910 | HIRAN_2 | 509 | 634 | 2.1E-5 | IPR014905 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 935 | 973 | - | - |
| Coils | Coil | Coil | 916 | 950 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07400.1 | forkhead-associated domain-containing protein / FHA domain-containing protein. | 0 |
| RefSeq | XP_017215380.1 | PREDICTED: uncharacterized protein LOC108193290 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5B7J2 | HIRAN domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_018709 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.81388 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.19398 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.913971 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.657652 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.63003 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.657477 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.299991 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.932986 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.939275 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.120972 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.873114 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.85907 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.542901 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.805067 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.004504 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.000148 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.998041 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.333631 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.270043 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.188285 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.534059 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.952387 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.107375 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.087501 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.911826 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.675571 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.692488 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.300268 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.601411 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.564614 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.490144 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.406998 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.673855 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.714927 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.935907 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.858493 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.883947 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.990287 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.027245 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.565695 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.847897 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.932858 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.119168 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.237167 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.236327 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.383093 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.590802 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.036624 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.065658 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.157762 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18349 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20431 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah031557, Ah031559 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g156810 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg2134, Sbi_jg2136, Sbi_jg34371 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2635 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005862 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71130, Sgl74713 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000037797 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0023210, CQ.Regalona.r1.7BG0025820 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30012820 |
| Apiaceae | Apium graveolens | 1 | AgUnG01489 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G016250 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712405 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1570.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G26280 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012509m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35470.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g028410.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2899 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3044 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g03750 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g10200 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.524 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020067 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G09536, Lb5G26726 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.5309, BH09.938, CH08.1681, CH09.1050 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0319020, gene-QOZ80_4BG0350420 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0164790.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043740 |
| Poaceae | Oryza coarctata | 1 | Oco07G004890 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g33050.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G080500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302944, Pt_Chr0703431 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr25G012130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G516500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG042000, gene_TRIDC2BG044960 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G289700.1, TraesCS2B02G306300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb084530_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-7787, nbis-gene-7788 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21198 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.198, evm.TU.LG15.766 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g08020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.281 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29073 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6891 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2017 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.179 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001449 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2456 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6135 |
| Salicaceae | Populus euphratica | 2 | populus_peu30400, populus_peu30401 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633125 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012650 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4636 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2352 |
| Zosteraceae | Zostera marina | 1 | Zosma03g15080.v3.1 |