Basic Information
Locus ID:
AgUnG01470
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg8251 | 737 | 3997 | + | AgUnG01470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 73,332.91 Da | 38.22 | 91.62 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 347 | 373 | 1.1 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 474 | 522 | 7.1E-10 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 115 | 149 | 3.9E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 277 | 307 | 0.042 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 448 | 473 | 0.0063 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 249 | 274 | 0.16 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 425 | 528 | 2.2E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 15 | 182 | 1.1E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 329 | 424 | 8.7E-13 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 234 | 328 | 5.7E-16 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 513 | 546 | 3.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 118 | 150 | 3.8E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 277 | 311 | 6.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 476 | 510 | 2.2E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 474 | 504 | 9.426776 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 275 | 309 | 10.084454 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 116 | 150 | 11.651919 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 510 | 545 | 9.141782 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 373 | 407 | 8.560833 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49740.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_017235232.1 | PREDICTED: pentatricopeptide repeat-containing protein At3g49740 [Daucus carota subsp. sativus] | 0 |
| Q9M2Y4 | Pentatricopeptide repeat-containing protein At3g49740 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E84 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6L5B809 | DYW_deaminase domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_023993 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.666298 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.466204 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.267107 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.363818 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.266187 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.372397 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.433432 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.322077 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.22473 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.320317 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.349882 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.316048 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.401778 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.3544 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.108866 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.065862 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.119528 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.17189 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.12095 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.245921 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.274536 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.139549 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.322801 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.208488 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.244833 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.17586 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.120041 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.342354 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.051542 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.040953 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.020668 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.510859 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.094902 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.091517 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.025817 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.195741 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.273554 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.135316 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.233145 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.15518 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.309309 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.92892 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.44178 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.3891 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.491143 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.577756 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.018239 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.338616 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30734 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16765 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027500 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g128540, BVRB_6g128580 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13215, Sbi_jg52603 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9214 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010092 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34551, Sgl39966 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000000450, gene:ENSEOMG00000027756 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30204700, pistato.v30204710 |
| Apiaceae | Apium graveolens | 2 | Ag9G00075, AgUnG01470 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G007320 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721431 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3888.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G01128 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G49740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010148m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g12340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g075510.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0443 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0460 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6681 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2605 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1610, evm.TU.LG12.281 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g27490 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1177 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-792 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2432 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.237 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19235 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1871 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640585 |
| Solanaceae | Solanum chilense | 1 | SOLCI004421600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018860 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25187_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3545 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01920.v3.1 |