halophFGD

Basic Information

Locus ID: AgUnG01431

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: U-box domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg8046	55313	61017	+	AgUnG01431

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.90	99,207.25 Da	58.84	87.11	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01989	STK_N	44	196	4.58062E-46	-
CDD	cd16655	RING-Ubox_WDSUB1_like	813	854	1.60464E-22	-
Pfam	PF04564	U-box domain	809	878	1.1E-18	IPR003613
Pfam	PF00069	Protein kinase domain	526	778	4.6E-41	IPR000719
SUPERFAMILY	SSF57850	RING/U-box	798	878	2.3E-24	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	501	788	2.16E-66	IPR011009
Gene3D	G3DSA:3.40.50.620	HUPs	45	178	1.5E-5	IPR014729
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	500	594	6.3E-28	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	595	805	2.9E-46	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	807	879	1.5E-27	IPR013083
SMART	SM00220	serkin_6	522	787	9.2E-33	IPR000719
SMART	SM00504	Ubox_2	812	875	1.4E-25	IPR003613
ProSiteProfiles	PS51698	U-box domain profile.	808	879	32.757393	IPR003613
ProSiteProfiles	PS50011	Protein kinase domain profile.	522	788	34.279911	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	528	549	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	640	652	-	IPR008271
Coils	Coil	Coil	369	389	-	-
Coils	Coil	Coil	396	416	-	-
Coils	Coil	Coil	424	493	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation) GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004842 (ubiquitin-protein transferase activity) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G45910.1	U-box domain-containing protein kinase family protein.
RefSeq	XP_017235870.1	PREDICTED: U-box domain-containing protein 33-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q8GUH1	U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2
TrEMBL	A0A6L5B7Q1	RING-type E3 ubiquitin transferase OS=Apium graveolens OX=4045 GN=AG4045_030741 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.490929	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	10.082775	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	5.054894	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	5.444448	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	5.664143	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	5.07825	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	5.464786	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.092897	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.984521	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.77041	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.975612	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.726617	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.572699	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.781274	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	23.330193	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	23.178347	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	7.064293	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	4.079627	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.61777	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.986673	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.382586	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.463129	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.398312	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.323846	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.401881	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.851278	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.655235	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.651808	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.783518	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.442726		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.463537		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.418774		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.937562		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.682977		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.43016		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.87516		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.778641		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.822544		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.00181	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.945992	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.39891	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.783094	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	7.165482	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	4.730895	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.984216	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.368821	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.294553	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.148092	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.844176	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.400081	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg1927, jg2286, jg29359
Aizoaceae	Mesembryanthemum crystallinum	4	gene_16140, gene_1698, gene_1699, gene_1700
Amaranthaceae	Atriplex hortensis	4	Ah022999, Ah023000, Ah023003, Ah026927
Amaranthaceae	Beta vulgaris	7	BVRB_1g004560, BVRB_1g004570, BVRB_1g004590, BVRB_1g004600 ... BVRB_1g004610, BVRB_1g004620, BVRB_3g055100
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg38402, Sbi_jg4507, Sbi_jg4511, Sbi_jg4512, Sbi_jg49407 ... Sbi_jg49409, Sbi_jg49410, Sbi_jg6509
Amaranthaceae	Salicornia europaea	4	Seu_jg15408, Seu_jg5923, Seu_jg5925, Seu_jg5926
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00000444, GOSA_00000445, GOSA_00000446, GOSA_00000447 ... GOSA_00006500
Amaranthaceae	Suaeda glauca	14	Sgl01957, Sgl07113, Sgl11066, Sgl11067, Sgl11069, Sgl11070 ... Sgl11071, Sgl11072, Sgl16474, Sgl16475, Sgl16481, Sgl16483, Sgl16484, Sgl16485
Amaranthaceae	Chenopodium album	14	gene:ENSEOMG00000004247, gene:ENSEOMG00000013828 ... gene:ENSEOMG00000015346, gene:ENSEOMG00000025320, gene:ENSEOMG00000031798, gene:ENSEOMG00000032904, gene:ENSEOMG00000034205, gene:ENSEOMG00000034655, gene:ENSEOMG00000035157, gene:ENSEOMG00000036136, gene:ENSEOMG00000036721, gene:ENSEOMG00000047518, gene:ENSEOMG00000048036, gene:ENSEOMG00000050091
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.1AG0002930, CQ.Regalona.r1.2BG0024870 ... CQ.Regalona.r1.2BG0024880, CQ.Regalona.r1.2BG0024890, CQ.Regalona.r1.3AG0003050, CQ.Regalona.r1.3BG0003310, CQ.Regalona.r1.4AG0016310, CQ.Regalona.r1.6AG0020690, CQ.Regalona.r1.6BG0021750
Anacardiaceae	Pistacia vera	3	pistato.v30004550, pistato.v30004570, pistato.v30182970
Apiaceae	Apium graveolens	4	Ag2G02024, Ag6G00182, Ag6G01591, AgUnG01431
Arecaceae	Cocos nucifera	3	COCNU_07G011370, COCNU_08G010440, COCNU_09G007890
Arecaceae	Phoenix dactylifera	4	gene-LOC103698606, gene-LOC103705579, gene-LOC103717427 ... gene-LOC120103911
Asparagaceae	Asparagus officinalis	4	AsparagusV1_07.2106.V1.1, AsparagusV1_Unassigned.220.V1.1 ... AsparagusV1_Unassigned.221.V1.1, AsparagusV1_Unassigned.222.V1.1
Asteraceae	Flaveria trinervia	2	Ftri18G00277, Ftri7G01165
Brassicaceae	Arabidopsis thaliana	5	AT2G45910.1, AT2G45920.1, AT3G49060.1, AT3G61390.2 ... AT3G61410.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10001310m.g.v1.0, Thhalv10006399m.g.v1.0 ... Thhalv10006400m.g.v1.0, Thhalv10010130m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp1g00650.v2.2, Sp1g00660.v2.2, Sp4g27980.v2.2 ... Sp4g27990.v2.2, Sp5g01990.v2.2, Sp5g02000.v2.2, Sp5g02010.v2.2, Sp5g13010.v2.2
Brassicaceae	Brassica nigra	12	BniB01g001180.2N, BniB01g001190.2N, BniB03g061970.2N ... BniB06g004290.2N, BniB06g004300.2N, BniB06g009850.2N, BniB06g053220.2N, BniB06g062030.2N, BniB06g062040.2N, BniB08g062310.2N, BniB08g075520.2N, BniB08g075530.2N
Casuarinaceae	Casuarina equisetifolia	20	Ceq01G0562, Ceq01G0564, Ceq01G0565, Ceq01G0569, Ceq05G0386 ... Ceq05G0387, Ceq05G0388, Ceq05G0390, Ceq05G0393, Ceq05G0395, Ceq05G0399, Ceq05G0401, Ceq05G0403, Ceq05G0404, Ceq05G0407, Ceq05G1208, Ceq05G1209, Ceq05G1211, Ceq05G1213, Ceq09G1454
Casuarinaceae	Casuarina glauca	19	Cgl01G0644, Cgl01G0645, Cgl01G0646, Cgl01G0647, Cgl01G0650 ... Cgl04G0110, Cgl05G0088, Cgl05G0089, Cgl05G0401, Cgl05G0402, Cgl05G0403, Cgl05G0405, Cgl05G0406, Cgl05G0409, Cgl05G1219, Cgl05G1220, Cgl05G1221, Cgl05G1222, Cgl09G1547
Cymodoceaceae	Cymodocea nodosa	8	gene.Cymno01g00930, gene.Cymno02g09510, gene.Cymno03g06020 ... gene.Cymno06g13400, gene.Cymno10g02580, gene.Cymno10g02590, gene.Cymno10g02600, gene.Cymno14g01100
Hydrocharitaceae	Thalassia testudinum	9	gene.Thate01g06730, gene.Thate02g28560, gene.Thate03g11000 ... gene.Thate03g15190, gene.Thate07g05560, gene.Thate08g01700, gene.Thate08g01710, gene.Thate08g11100, gene.Thate08g22530
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-2802, nbisL1-mrna-2804
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2746, evm.TU.LG04.861
Plantaginaceae	Plantago ovata	4	Pov_00016715, Pov_00031928, Pov_00031933, Pov_00040981
Plumbaginaceae	Limonium bicolor	13	Lb0G38372, Lb0G38373, Lb1G03520, Lb1G03521, Lb1G03523 ... Lb1G03524, Lb1G03963, Lb1G03964, Lb1G04003, Lb1G05483, Lb2G11070, Lb2G11073, Lb2G11079
Poaceae	Echinochloa crus-galli	22	AH01.3004, AH01.3006, AH03.1123, AH03.1124, AH07.2917 ... AH07.2921, BH01.3336, BH01.3337, BH01.3341, BH03.1287, BH03.1288, BH07.2740, BH07.2741, BH07.2742, BH07.2743, CH01.3583, CH01.3586, CH03.1387, CH03.1443, CH03.1447, CH07.2814, CH07.2815
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_2AG0115760, gene-QOZ80_2AG0115780 ... gene-QOZ80_2AG0140160, gene-QOZ80_2BG0169630, gene-QOZ80_2BG0169650, gene-QOZ80_2BG0195820, gene-QOZ80_2BG0195830, gene-QOZ80_4AG0307630, gene-QOZ80_4BG0338650, gene-QOZ80_6AG0525150, gene-QOZ80_6AG0525170
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0055700.1, HORVU.MOREX.r3.1HG0055720.1 ... HORVU.MOREX.r3.1HG0055740.1, HORVU.MOREX.r3.5HG0495240.1, HORVU.MOREX.r3.5HG0495250.1, HORVU.MOREX.r3.6HG0602140.1
Poaceae	Lolium multiflorum	14	gene-QYE76_012484, gene-QYE76_012486, gene-QYE76_012488 ... gene-QYE76_029937, gene-QYE76_029938, gene-QYE76_038239, gene-QYE76_038240, gene-QYE76_038241, gene-QYE76_038251, gene-QYE76_038252, gene-QYE76_049683, gene-QYE76_049685, gene-QYE76_049694, gene-QYE76_071986
Poaceae	Oryza coarctata	8	Oco03G017560, Oco04G018310, Oco17G012270, Oco19G009530 ... Oco19G009550, Oco19G009700, Oco20G009450, Oco20G009470
Poaceae	Oryza sativa	6	LOC_Os09g39620.1, LOC_Os09g39640.1, LOC_Os10g40060.1 ... LOC_Os10g40100.1, LOC_Os10g40120.1, LOC_Os10g40490.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G294000, gene-BS78_01G294200 ... gene-BS78_02G134200, gene-BS78_02G134600
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0205954, Pt_Chr0403833, Pt_Chr0403883, Pt_Chr0405242 ... Pt_Chr0503115, Pt_Chr0503117, Pt_Chr0503150, Pt_Chr0503153, Pt_Chr0503154, Pt_Ctg00317, Pt_Ctg00318
Poaceae	Sporobolus alterniflorus	13	Chr06G005580, Chr06G028270, Chr09G004400, Chr09G004420 ... Chr10G005450, Chr10G005460, Chr11G013750, Chr13G020510, Chr13G020530, Chr15G007210, Chr15G018730, Chr15G019520, Chr21G008490
Poaceae	Thinopyrum elongatum	10	Tel1E01G357300, Tel1E01G357600, Tel4E01G012800 ... Tel4E01G012900, Tel4E01G573700, Tel4E01G574000, Tel4E01G574100, Tel5E01G471100, Tel5E01G471200, Tel6E01G461500
Poaceae	Triticum dicoccoides	16	gene_TRIDC1AG031360, gene_TRIDC1AG031380 ... gene_TRIDC1AG031400, gene_TRIDC1BG036730, gene_TRIDC1BG036820, gene_TRIDC1BG036860, gene_TRIDC4AG047370, gene_TRIDC4BG001240, gene_TRIDC5AG044080, gene_TRIDC5BG048050, gene_TRIDC5BG048060, gene_TRIDC6AG037910, gene_TRIDC6AG050680, gene_TRIDC6BG003080, gene_TRIDC6BG044860, gene_TRIDC6BG059270
Poaceae	Triticum aestivum	23	TraesCS1A02G207800.1, TraesCS1A02G207900.1 ... TraesCS1A02G208100.1, TraesCS1B02G221500.1, TraesCS1B02G221900.1, TraesCS1B02G222200.1, TraesCS1D02G211100.1, TraesCS1D02G211200.1, TraesCS1D02G211400.1, TraesCS4B02G350300.1, TraesCS4D02G003800.1, TraesCS5A02G294600.1, TraesCS5A02G294700.1, TraesCS5B02G293900.1, TraesCS5B02G294000.1, TraesCS5D02G302000.1, TraesCS5D02G302100.1, TraesCS6A02G245500.1, TraesCS6A02G338300.1, TraesCS6B02G278900.1, TraesCS6B02G368900.1, TraesCS6D02G227900.1, TraesCS6D02G319000.1
Poaceae	Zea mays	3	Zm00001eb022810_P002, Zm00001eb022920_P001 ... Zm00001eb186860_P001
Poaceae	Zoysia japonica	6	nbis-gene-22343, nbis-gene-22344, nbis-gene-31811 ... nbis-gene-47009, nbis-gene-47010, nbis-gene-53375
Poaceae	Zoysia macrostachya	7	Zma_g15632, Zma_g15633, Zma_g16830, Zma_g20222, Zma_g29844 ... Zma_g31405, Zma_g32024
Portulacaceae	Portulaca oleracea	11	evm.TU.LG04.2255, evm.TU.LG04.2274, evm.TU.LG04.2275 ... evm.TU.LG06.33, evm.TU.LG06.34, evm.TU.LG11.1642, evm.TU.LG19.924, evm.TU.LG19.925, evm.TU.LG19.927, evm.TU.LG24.927, evm.TU.LG24.929
Posidoniaceae	Posidonia oceanica	11	gene.Posoc02g13810, gene.Posoc02g13850, gene.Posoc02g13880 ... gene.Posoc02g13900, gene.Posoc03g01950, gene.Posoc03g01960, gene.Posoc06g05730, gene.Posoc06g05760, gene.Posoc06g05770, gene.Posoc06g05780, gene.Posoc06g05800
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_11_RagTag.1408, evm.TU.Scaffold_9_RagTag.504
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12699, nbisL1-mrna-21632
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-19077, nbisL1-mrna-1920, nbisL1-mrna-5533
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-22421, nbisL1-mrna-7330
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.262, evm.TU.utg000010l.385
Rhizophoraceae	Kandelia obovata	2	Maker00008809, Maker00017690
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1088, nbisL1-mrna-1761
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-19631, nbisL1-mrna-20577
Salicaceae	Populus euphratica	6	populus_peu27691, populus_peu27692, populus_peu27693 ... populus_peu30661, populus_peu31660, populus_peu31661
Solanaceae	Lycium barbarum	2	gene-LOC132631932, gene-LOC132645572
Solanaceae	Solanum chilense	2	SOLCI001350600, SOLCI004625900
Solanaceae	Solanum pennellii	2	gene-LOC107007977, gene-LOC107015310
Tamaricaceae	Reaumuria soongarica	6	MSTRG.13959_chr08_+, MSTRG.19974_chr11_+, gene_1424 ... MSTRG.19976_chr11_-, gene_15233, gene_4158
Tamaricaceae	Tamarix chinensis	6	TC03G2242, TC03G2251, TC03G2252, TC06G2369, TC09G2217 ... TC09G2218
Zosteraceae	Zostera marina	3	Zosma03g26770.v3.1, Zosma03g26780.v3.1, Zosma05g28470.v3.1