Basic Information
Locus ID:
AgUnG01418
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
FH protein interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg7979 | 18651 | 27089 | + | AgUnG01418 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 33,124.08 Da | 37.08 | 92.77 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00805 | Pentapeptide repeats (8 copies) | 133 | 166 | 0.0011 | IPR001646 |
| Pfam | PF00805 | Pentapeptide repeats (8 copies) | 168 | 205 | 1.9E-8 | IPR001646 |
| Pfam | PF02214 | BTB/POZ domain | 10 | 98 | 3.1E-18 | IPR003131 |
| Pfam | PF00805 | Pentapeptide repeats (8 copies) | 237 | 271 | 6.1E-13 | IPR001646 |
| SUPERFAMILY | SSF141571 | Pentapeptide repeat-like | 132 | 295 | 1.86E-45 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 8 | 109 | 2.75E-26 | IPR011333 |
| Gene3D | G3DSA:2.160.20.80 | - | 119 | 300 | 5.5E-52 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 113 | 5.1E-32 | IPR011333 |
| SMART | SM00225 | BTB_4 | 8 | 110 | 2.6E-12 | IPR000210 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55000.1 | potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein. FH protein interacting protein FIP2 | 0 |
| RefSeq | XP_017249041.1 | PREDICTED: FH protein interacting protein FIP2 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q9SE95 | FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L5B761 | BTB domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_024199 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 38.161709 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 32.701267 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 33.744911 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 35.375969 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 36.874931 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 38.958096 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 31.69804 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 25.640314 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 64.864601 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 63.045044 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 65.410049 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 71.348579 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 65.623741 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 53.792133 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 37.812698 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 34.901768 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 40.633686 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 32.239456 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 39.877159 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 42.157307 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 48.875565 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 49.858967 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 49.274315 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 59.712589 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 50.776039 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 44.092823 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 42.09259 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 38.816563 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 50.926128 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 51.700783 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 48.10923 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 41.097073 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 29.84305 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 38.578072 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 27.327906 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 28.663628 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 29.277409 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 33.416531 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 31.484306 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 28.055584 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 25.145266 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 50.542202 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 50.787758 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 68.300446 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 62.94347 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 56.32494 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 47.731991 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 59.95018 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 68.917221 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 62.858612 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31852, jg32768 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2358 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023943 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g009370 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015477, gene:ENSEOMG00000032748 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0011950, CQ.Regalona.r1.1BG0013990 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30087240, pistato.v30087660 |
| Apiaceae | Apium graveolens | 1 | AgUnG01418 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G000480 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707040 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1690.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G17783 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G55000.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014237m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g16940.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g015460.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1428 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1458 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00410 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0082s00025.v1.0, Dusal.0244s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g22950 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2016 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003576 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25889 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4925, BH01.4857, BH01.5139 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0234250, gene-QOZ80_3BG0293750 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0401280.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070622 |
| Poaceae | Oryza coarctata | 3 | Oco05G003310, Oco06G003390, Oco20G004710 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g06160.1, LOC_Os10g30190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G475800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G036950, Chr12G002590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G459300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG004490, gene_TRIDC4BG047150 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G032800.2, TraesCS4B02G272500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb403220_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4448 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4388 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.480, evm.TU.LG26.557 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g00990 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.440, evm.TU.Scaffold_2_RagTag.1809 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-2979, nbisL1-mrna-3188, nbisL1-mrna-7737 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1529, nbisL1-mrna-16060 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13897, nbisL1-mrna-5473 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.210, evm.TU.utg000012l.267 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005836, Maker00011241 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12829, nbisL1-mrna-8529 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16372 |
| Salicaceae | Populus euphratica | 2 | populus_peu16113, populus_peu19354 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607619, gene-LOC132621794 |
| Solanaceae | Solanum chilense | 1 | SOLCI005394500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002199 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15920_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0703 |
| Zosteraceae | Zostera marina | 1 | Zosma05g33030.v3.1 |