Basic Information
Locus ID:
AgUnG01409
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg7920 | 107894 | 110677 | - | AgUnG01409 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 43,315.75 Da | 55.99 | 59.13 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 264 | 306 | 2.42496E-23 | - |
| Pfam | PF13639 | Ring finger domain | 264 | 306 | 1.4E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 11 | 42 | 4.6E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 312 | 4.01E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 232 | 312 | 9.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 265 | 305 | 6.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 265 | 306 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 343 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56340.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017219842.1 | PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Daucus carota subsp. sativus] | 0 |
| Q6AVN2 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L5B9R6 | RING-type E3 ubiquitin transferase OS=Apium graveolens OX=4045 GN=AG4045_027440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 41.050735 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 40.895962 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 54.396194 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 45.536285 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 34.977222 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 44.891602 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 31.783302 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 51.266426 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 31.505749 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 43.546314 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 30.934473 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.865498 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.716749 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.823563 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.4151 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.794598 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.371841 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 19.829252 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 15.720339 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.722691 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 27.29966 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 20.768171 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.002111 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.736866 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.111641 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.370476 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.700539 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.919106 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 19.231321 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 27.381655 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 17.535721 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 20.149439 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 105.62748 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 64.481369 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 93.013832 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 60.813129 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 50.849403 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 56.413765 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.821485 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.498201 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.10422 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 73.332321 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 72.630165 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 33.053368 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 37.383305 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 24.564655 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 34.788052 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.583866 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 52.284843 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 38.625782 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38166 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30085460, pistato.v30089740 |
| Apiaceae | Apium graveolens | 1 | AgUnG01409 |
| Arecaceae | Cocos nucifera | 4 | COCNU_04G005370, COCNU_04G011700, COCNU_16G005370 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701051, gene-LOC103705352, gene-LOC103709650 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.1517.V1.1, AsparagusV1_04.470.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri12G11428, Ftri16G01532, Ftri2G00136 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G55530.1, AT3G13430.1, AT4G26400.2, AT5G56340.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10012351m.g.v1.0, Thhalv10013831m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g41140.v2.2, Sp3g11620.v2.2, Sp6g18170.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB02g035240.2N, BniB02g082410.2N, BniB05g011040.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2480 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G2693, Cgl06G0406 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g17700 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g05750, gene.Thate07g12040 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2089, evm.TU.LG09.340 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025594, Pov_00041582 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.3791, AH05.1983, AH08.559, BH01.4134, BH05.2108 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_3AG0210960, gene-QOZ80_3AG0246670 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0070130.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_007808, gene-QYE76_013946, gene-QYE76_068236 ... |
| Poaceae | Oryza coarctata | 4 | Oco05G012390, Oco06G014060, Oco09G012670, Oco10G012740 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g20870.1, LOC_Os03g59760.1, LOC_Os05g40980.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G036300, gene-BS78_01G368300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504454, Pt_Chr0504513 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G001880, Chr01G018180, Chr01G033650, Chr04G010270 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G494100, Tel4E01G316200, Tel5E01G740400 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG045460, gene_TRIDC1BG051430 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1B02G316300.1.cds1, TraesCS1D02G305300.1.cds1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb212150_P001, Zm00001eb291150_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-15457, nbis-gene-16568, nbis-gene-25336 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g1300, Zma_g199, Zma_g2507, Zma_g28469, Zma_g3717 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1093, evm.TU.LG20.779 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g05990, gene.Posoc02g12830 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.399, evm.TU.Scaffold_7_RagTag.1769 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10346, nbisL1-mrna-19763 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16094, nbisL1-mrna-4416 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17658, nbisL1-mrna-5432 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000002l.2, add.evm.TU.utg000012l.92 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003503, Maker00012119 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-17872, nbisL1-mrna-19058, nbisL1-mrna-20135 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-12450, nbisL1-mrna-20449, nbisL1-mrna-548 |
| Salicaceae | Populus euphratica | 5 | populus_peu04497, populus_peu16097, populus_peu19406 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626503 |
| Solanaceae | Solanum chilense | 1 | SOLCI000816700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008529 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5466 |
| Zosteraceae | Zostera marina | 1 | Zosma06g25510.v3.1 |