Basic Information
Locus ID:
AgUnG01348
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Probably inactive leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg7526 | 101263 | 104342 | - | AgUnG01348 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 94,623.78 Da | 33.86 | 105.34 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 604 | 867 | 6.3E-35 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 63 | 8.5E-12 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 216 | 277 | 9.0E-8 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 459 | 480 | 0.094 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 206 | 519 | 1.0E-46 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 604 | 867 | 9.29E-56 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 26 | 304 | 4.93E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 601 | 671 | 1.0E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 202 | 1.4E-43 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 672 | 870 | 5.1E-45 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 262 | 533 | 6.5E-64 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 203 | 261 | 6.0E-12 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 264 | 288 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 238 | 261 | 5.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 189 | 214 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 456 | 479 | 81.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 93 | 117 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 118 | 141 | 170.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 595 | 870 | 30.534399 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 458 | 481 | 7.54254 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 456 | 469 | 6.9E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 241 | 254 | 6.9E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06940.1 | Leucine-rich repeat receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_017254623.1 | PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Daucus carota subsp. sativus] | 0 |
| Q9FL51 | Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana OX=3702 GN=At5g06940 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6L5B7Y2 | Protein kinase domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_026960 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.290787 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.261012 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.36713 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.57372 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.460642 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.558184 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.450938 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.299179 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.344467 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.589753 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.517817 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.823859 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.70335 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.701351 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.351846 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.635159 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.188583 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.95796 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.880353 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.700285 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.343661 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.169219 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.807194 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.278094 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.753404 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.825933 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.652817 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.550106 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.513772 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.197406 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.481167 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.707896 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.165833 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.236486 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.043401 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.10241 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.465234 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.126029 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.462263 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.048462 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.756486 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.022384 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.535499 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.375269 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.994948 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 22.00268 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15939, jg4372 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19072 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021687 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g060970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59254, Sbi_jg63379 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23513 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018421 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl23762 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013500, gene:ENSEOMG00000029572 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0021250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30187100 |
| Apiaceae | Apium graveolens | 1 | AgUnG01348 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G012070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717743 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1243.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G33055 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G06940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012646m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35930.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053900.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1109 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1278 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g08490 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2442 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006615 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4085, BH09.1445, CH09.1555 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0313910, gene-QOZ80_4BG0345070 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0174810.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044667 |
| Poaceae | Oryza coarctata | 2 | Oco07G008350, Oco08G008250 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g39650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G131200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302333, Pt_Chr0302386 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G010820, Chr25G008940, Chr26G008900 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G582400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG048640, gene_TRIDC2BG051300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G330000.1, TraesCS2B02G352300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb424770_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7420 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21450 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.524, evm.TU.LG15.421 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1142 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3779 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16334 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18858 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.547 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005536 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12451 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5592 |
| Salicaceae | Populus euphratica | 2 | populus_peu11002, populus_peu26138 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634023 |
| Solanaceae | Solanum chilense | 1 | SOLCI006941300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012870 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.6957_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2411 |