halophFGD

Basic Information

Locus ID: AgUnG01336

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Autophagy-related protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg7464_2	85361	87179	+	AgUnG01336

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.87	13,658.57 Da	34.72	84.45	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16128	Ubl_ATG8	12	114	1.73628E-70	-
Pfam	PF02991	Autophagy protein Atg8 ubiquitin like	14	117	3.5E-51	IPR004241
SUPERFAMILY	SSF54236	Ubiquitin-like	4	117	1.18E-43	IPR029071
Gene3D	G3DSA:3.10.20.90	-	1	117	2.2E-59	-

KEGG Pathway

KO Term:

K08341 (GABA(A) receptor-associated protein)

Pathway:

ko04068 (FoxO signaling pathway) map04068 (FoxO signaling pathway) ko04136 (Autophagy - other) map04136 (Autophagy - other) ko04137 (Mitophagy - animal) map04137 (Mitophagy - animal) ko04138 (Autophagy - yeast) map04138 (Autophagy - yeast) ko04139 (Mitophagy - yeast) map04139 (Mitophagy - yeast) ko04140 (Autophagy - animal) map04140 (Autophagy - animal) ko04212 (Longevity regulating pathway - worm) map04212 (Longevity regulating pathway - worm) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway) map04621 (NOD-like receptor signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G05630.1	Ubiquitin-like superfamily protein. in the Arabidopsis autophagy pathway
RefSeq	XP_017255018.1	PREDICTED: autophagy-related protein 8C [Daucus carota subsp. sativus]
Swiss-Prot	M1C146	Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV=1
TrEMBL	A0A6L5B7V8	Autophagy-related protein OS=Apium graveolens OX=4045 GN=AG4045_030326 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	144.448898	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	186.821686	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	202.741943	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	184.088196	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	178.492996	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	224.00058	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	207.438232	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	201.793457	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	154.413193	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	126.018417	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	139.452362	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	139.335724	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	124.494766	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	125.519836	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	149.297913	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	111.245018	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	183.47113	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	138.307037	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	120.155441	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	132.739395	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	150.382187	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	248.063629	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	223.731918	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	242.593399	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	189.178268	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	133.874496	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	150.808182	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	169.216095	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	150.677185	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	210.641327		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	136.920135		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	144.510345		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	348.276093		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	315.822296		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	420.4263		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	408.551117		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	313.070068		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	285.005676		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	98.147537	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	99.10144	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	104.497139	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	174.987793	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	333.218964	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	371.371246	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	485.705109	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	185.609589	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	490.514496	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	224.300949	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	263.267609	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	235.885681	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg20428, jg21521, jg24548, jg38386, jg4903
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1954, gene_7272
Amaranthaceae	Atriplex hortensis	2	Ah004802, Ah017517
Amaranthaceae	Beta vulgaris	1	BVRB_8g186120
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg18185, Sbi_jg24379, Sbi_jg36529, Sbi_jg40157 ... Sbi_jg50100
Amaranthaceae	Salicornia europaea	3	Seu_jg11805, Seu_jg1734, Seu_jg4532
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00001556, GOSA_00006679, GOSA_00011330
Amaranthaceae	Suaeda glauca	6	Sgl23371, Sgl28486, Sgl46324, Sgl51038, Sgl51548, Sgl56832
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000004967, gene:ENSEOMG00000009623 ... gene:ENSEOMG00000011899, gene:ENSEOMG00000021276, gene:ENSEOMG00000024792, gene:ENSEOMG00000028186, gene:ENSEOMG00000033809, gene:ENSEOMG00000043967, gene:ENSEOMG00000047854
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.4AG0022700, CQ.Regalona.r1.4BG0023920 ... CQ.Regalona.r1.5AG0000210, CQ.Regalona.r1.5BG0000240, CQ.Regalona.r1.8BG0001590
Anacardiaceae	Pistacia vera	6	pistato.v30002560, pistato.v30018420, pistato.v30069320 ... pistato.v30142710, pistato.v30156530, pistato.v30158410
Apiaceae	Apium graveolens	4	Ag4G02386, Ag6G00614, Ag8G01081, AgUnG01336
Arecaceae	Cocos nucifera	4	COCNU_06G012210, COCNU_09G003200, COCNU_14G008040 ... scaffold001580G000020
Arecaceae	Phoenix dactylifera	4	gene-LOC103705136, gene-LOC103717620, gene-LOC103720494 ... gene-LOC103720683
Asparagaceae	Asparagus officinalis	7	AsparagusV1_03.1193.V1.1, AsparagusV1_04.3529.V1.1 ... AsparagusV1_06.169.V1.1, AsparagusV1_07.3789.V1.1, AsparagusV1_08.213.V1.1, AsparagusV1_08.2484.V1.1, AsparagusV1_10.18.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G20793, Ftri16G15905, Ftri16G24720, Ftri2G17114 ... Ftri5G07793
Brassicaceae	Arabidopsis thaliana	7	AT1G62040.2, AT2G05630.2, AT2G45170.1, AT3G60640.1 ... AT4G04620.1, AT4G16520.1, AT4G21980.2
Brassicaceae	Eutrema salsugineum	6	Thhalv10006314m.g.v1.0, Thhalv10009130m.g.v1.0 ... Thhalv10023763m.g.v1.0, Thhalv10026531m.g.v1.0, Thhalv10026582m.g.v1.0, Thhalv10029077m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp2g02520.v2.2, Sp3g24090.v2.2, Sp4g27220.v2.2 ... Sp5g02600.v2.2, Sp6g04260.v2.2, Sp7g15090.v2.2, Sp7g20170.v2.2, SpUn0031_0100.v2.2
Brassicaceae	Brassica nigra	10	BniB02g010840.2N, BniB02g059100.2N, BniB02g073200.2N ... BniB05g015080.2N, BniB05g019790.2N, BniB05g056100.2N, BniB06g055310.2N, BniB07g022230.2N, BniB08g029440.2N, BniB08g047680.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G1342, Ceq02G2428, Ceq03G0129, Ceq04G1611, Ceq05G1145
Casuarinaceae	Casuarina glauca	6	Cgl01G1504, Cgl02G2496, Cgl02G2510, Cgl03G0141, Cgl04G1790 ... Cgl05G1156
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno03g07670, gene.Cymno13g01380, gene.Cymno17g05370 ... gene.Cymno18g04160
Dunaliellaceae	Dunaliella salina	1	Dusal.0066s00009.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g19110, gene.Thate04g16640, gene.Thate08g06660
Malvaceae	Hibiscus hamabo Siebold & Zucc.	6	nbisL1-mrna-1016, nbisL1-mrna-11142, nbisL1-mrna-2541 ... nbisL1-mrna-2772, nbisL1-mrna-2781, nbisL1-mrna-4834
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG04.147, evm.TU.LG04.2069, evm.TU.LG05.1886 ... evm.TU.LG10.1215, evm.TU.LG12.1134
Plantaginaceae	Plantago ovata	3	Pov_00005930, Pov_00008820, Pov_00039041
Plumbaginaceae	Limonium bicolor	6	Lb0G37232, Lb2G10002, Lb2G10034, Lb2G11251, Lb4G22083 ... Lb5G28293
Poaceae	Echinochloa crus-galli	6	AH03.3146, AH09.2345, BH03.3332, BH08.579, BH09.2542 ... CH09.2777
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_4AG0303440, gene-QOZ80_4BG0334350 ... gene-QOZ80_7BG0600590, gene-QOZ80_8AG0619930, gene-QOZ80_8BG0647810
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0141620.1, HORVU.MOREX.r3.2HG0194650.1
Poaceae	Lolium multiflorum	3	gene-QYE76_041023, gene-QYE76_041037, gene-QYE76_046407
Poaceae	Oryza coarctata	7	Oco07G016340, Oco08G015790, Oco13G008450, Oco14G008910 ... Oco15G003690, Oco16G003610, Oco23G003440
Poaceae	Oryza sativa	3	LOC_Os04g53240.4, LOC_Os07g32800.2, LOC_Os08g09240.1
Poaceae	Paspalum vaginatum	2	gene-BS78_06G234600, gene-BS78_07G073900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0301108, Pt_Chr0307444
Poaceae	Sporobolus alterniflorus	11	Chr16G002470, Chr17G002180, Chr19G005720, Chr20G012470 ... Chr23G004730, Chr25G002780, Chr26G015950, Chr27G011580, Chr28G007750, Chr29G010200, Chr30G002780
Poaceae	Thinopyrum elongatum	2	Tel2E01G416900, Tel2E01G790200
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG066400, gene_TRIDC2BG071430
Poaceae	Triticum aestivum	5	TraesCS2A02G224000.1, TraesCS2A02G468300.1 ... TraesCS2B02G274200.1, TraesCS2B02G491200.1, TraesCS2D02G229900.1
Poaceae	Zea mays	5	Zm00001eb070240_P001, Zm00001eb105850_P001 ... Zm00001eb171400_P001, Zm00001eb413320_P001, Zm00001eb431210_P001
Poaceae	Zoysia japonica	3	nbis-gene-38905, nbis-gene-48540, nbis-gene-5882
Poaceae	Zoysia macrostachya	4	Zma_g21988, Zma_g22601, Zma_g23730, Zma_g5221
Portulacaceae	Portulaca oleracea	8	evm.TU.LG02.1587, evm.TU.LG04.3548, evm.TU.LG09.387 ... evm.TU.LG10.154, evm.TU.LG16.31, evm.TU.LG17.150, evm.TU.LG18.878, evm.TU.LG20.991
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g19320, gene.Posoc07g03920, gene.Posoc10g03230
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_12_RagTag.1002, evm.TU.Scaffold_13_RagTag.55 ... evm.TU.Scaffold_14_RagTag.345, evm.TU.Scaffold_16_RagTag.326, evm.TU.Scaffold_5_RagTag.1517
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-12004, nbisL1-mrna-18023, nbisL1-mrna-20416 ... nbisL1-mrna-20483, nbisL1-mrna-23953, nbisL1-mrna-29764, nbisL1-mrna-8318, nbisL1-mrna-8395, nbisL1-mrna-8672
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-1187, nbisL1-mrna-12279, nbisL1-mrna-14869 ... nbisL1-mrna-19041, nbisL1-mrna-5433, nbisL1-mrna-8817
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10979, nbisL1-mrna-20209, nbisL1-mrna-20782 ... nbisL1-mrna-21347, nbisL1-mrna-21705
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000003l.841, evm.TU.utg000006l.872 ... evm.TU.utg000007l.165, evm.TU.utg000015l.38, evm.TU.utg000022l.300, evm.TU.utg000027l.33
Rhizophoraceae	Kandelia obovata	5	Maker00009248, Maker00013854, Maker00014190, Maker00015958 ... Maker00017401
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-10400, nbisL1-mrna-1216, nbisL1-mrna-16140 ... nbisL1-mrna-3439, nbisL1-mrna-6054, nbisL1-mrna-9450
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-15464, nbisL1-mrna-22750, nbisL1-mrna-23435 ... nbisL1-mrna-4718, nbisL1-mrna-6556
Salicaceae	Populus euphratica	8	populus_peu03379, populus_peu10340, populus_peu16400 ... populus_peu16412, populus_peu18491, populus_peu27021, populus_peu31812, populus_peu34231
Solanaceae	Lycium barbarum	6	gene-LOC132609823, gene-LOC132616552, gene-LOC132616774 ... gene-LOC132621576, gene-LOC132628164, gene-LOC132635085
Solanaceae	Solanum chilense	6	SOLCI000918800, SOLCI002510700, SOLCI003123000 ... SOLCI004698400, SOLCI005205100, SOLCI006737200
Solanaceae	Solanum pennellii	6	gene-LOC107011693, gene-LOC107012830, gene-LOC107024185 ... gene-LOC107026670, gene-LOC107028794, gene-LOC107032079
Tamaricaceae	Reaumuria soongarica	5	STRG.23131_chr05_-, STRG.30346_chr10_+, gene_13136 ... gene_1518, gene_17840
Tamaricaceae	Tamarix chinensis	4	TC01G2322, TC03G2630, TC05G2970, TC08G0087
Zosteraceae	Zostera marina	4	Zosma02g05600.v3.1, Zosma04g22010.v3.1, Zosma04g26530.v3.1 ... Zosma06g03630.v3.1