halophFGD

Basic Information

Locus ID: AgUnG01323

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg7321	11005	13329	-	AgUnG01323

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.01	34,386.59 Da	35.04	71.33	-0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02309	AUX/IAA family	34	308	4.5E-85	IPR033389
SUPERFAMILY	SSF54277	CAD & PB1 domains	194	298	1.72E-21	-
Gene3D	G3DSA:3.10.20.90	-	192	310	9.0E-43	-
ProSiteProfiles	PS51745	PB1 domain profile.	197	299	25.382967	IPR000270
MobiDBLite	mobidb-lite	consensus disorder prediction	141	161	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14484 (auxin-responsive protein IAA)

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G29080.1	phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2)
RefSeq	XP_017251389.1	PREDICTED: auxin-responsive protein IAA27-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9ZSY8	Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1
TrEMBL	A0A6L5B8J9	Auxin-responsive protein OS=Apium graveolens OX=4045 GN=AG4045_007193 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.241715	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.305276	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.813592	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.499424	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.717298	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.412464	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.320464	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.229509	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.061394	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.198498	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.68906	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	11.732106	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	9.15873	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	10.923698	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.346144	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.198049	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	3.819247	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	10.041551	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	3.339846	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	14.922171	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	8.265235	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	20.521582	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	26.42024	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	13.039204	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	17.825859	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.238676	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	15.266139	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	9.346599	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	5.041019	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.093718		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.370255		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.865671		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.260991		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.766754		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.110563		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.096261		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.37552		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.196112		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.843294	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.448633	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.885828	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.472684	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.014959	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	4.362223	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.871449	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.271114	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	5.194262	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.115576	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.060386	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg18133, jg19602, jg25321, jg30757, jg39876
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10727, gene_21314, gene_23662
Amaranthaceae	Atriplex hortensis	4	Ah002364, Ah010889, Ah012984, Ah014582
Amaranthaceae	Beta vulgaris	3	BVRB_6g152930, BVRB_8g196860, BVRB_9g221270
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg11365, Sbi_jg25012, Sbi_jg43022, Sbi_jg45624 ... Sbi_jg46319, Sbi_jg8866
Amaranthaceae	Salicornia europaea	3	Seu_jg11469, Seu_jg19738, Seu_jg20647
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002058, GOSA_00005327, GOSA_00007773
Amaranthaceae	Suaeda glauca	8	Sgl35715, Sgl41030, Sgl42253, Sgl47029, Sgl53416, Sgl55810 ... Sgl58682, Sgl61019
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000001205, gene:ENSEOMG00000008979 ... gene:ENSEOMG00000015656, gene:ENSEOMG00000018667, gene:ENSEOMG00000026643, gene:ENSEOMG00000034305, gene:ENSEOMG00000038377, gene:ENSEOMG00000047145, gene:ENSEOMG00000052437
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.6AG0000240, CQ.Regalona.r1.6BG0000130 ... CQ.Regalona.r1.7BG0011670, CQ.Regalona.r1.8AG0019830, CQ.Regalona.r1.8BG0022560
Anacardiaceae	Pistacia vera	5	pistato.v30042400, pistato.v30124190, pistato.v30124900 ... pistato.v30204260, pistato.v30256820
Apiaceae	Apium graveolens	7	Ag10G01523, Ag4G00154, Ag4G01188, Ag6G01444, Ag8G00230 ... Ag9G01116, AgUnG01323
Arecaceae	Cocos nucifera	4	COCNU_02G003860, COCNU_03G011800, COCNU_14G003610 ... scaffold023260G000050
Arecaceae	Phoenix dactylifera	4	gene-LOC103702546, gene-LOC103706840, gene-LOC103709490 ... gene-LOC103716613
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.459.V1.1, AsparagusV1_05.1898.V1.1
Asteraceae	Flaveria trinervia	9	Ftri13G12981, Ftri14G00199, Ftri15G16890, Ftri18G12429 ... Ftri18G24814, Ftri1G31643, Ftri3G11414, Ftri7G05048, Ftri8G12102
Brassicaceae	Arabidopsis thaliana	3	AT2G22670.4, AT4G29080.1, AT5G65670.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10000236m.g.v1.0, Thhalv10004532m.g.v1.0 ... Thhalv10025542m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g28750.v2.2, Sp4g01690.v2.2, Sp7g27020.v2.2
Brassicaceae	Brassica nigra	6	BniB01g021330.2N, BniB03g011460.2N, BniB04g000680.2N ... BniB05g008450.2N, BniB06g013950.2N, BniB07g043370.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G1029, Ceq05G0316, Ceq06G0402, Ceq06G1520
Casuarinaceae	Casuarina glauca	4	Cgl03G1114, Cgl05G0335, Cgl06G0417, Cgl06G1578
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g12310, gene.Cymno07g05240, gene.Cymno12g02610
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g25200, gene.Thate04g20560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-10596, nbisL1-mrna-3239, nbisL1-mrna-4377 ... nbisL1-mrna-768
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.318, evm.TU.LG02.2645, evm.TU.LG06.266
Plantaginaceae	Plantago ovata	2	Pov_00023258, Pov_00025698
Plumbaginaceae	Limonium bicolor	3	Lb1G05999, Lb1G06005, Lb5G26446
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_1BG0049300
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0249060.1
Poaceae	Lolium multiflorum	3	gene-QYE76_017236, gene-QYE76_033899, gene-QYE76_051569
Poaceae	Oryza coarctata	2	Oco10G004890, Oco11G009790
Poaceae	Paspalum vaginatum	1	gene-BS78_10G145100
Poaceae	Puccinellia tenuiflora	1	Pt_Ctg00027
Poaceae	Sporobolus alterniflorus	2	Chr14G011510, Chr21G016240
Poaceae	Zea mays	1	Zm00001eb284310_P002
Poaceae	Zoysia japonica	1	nbis-gene-17920
Portulacaceae	Portulaca oleracea	5	evm.TU.LG07.970, evm.TU.LG08.1637, evm.TU.LG12.1720 ... evm.TU.LG15.890, evm.TU.LG22.536
Posidoniaceae	Posidonia oceanica	9	gene.Posoc02g10760, gene.Posoc02g16660, gene.Posoc02g18880 ... gene.Posoc04g09970, gene.Posoc04g09980, gene.Posoc05g19100, gene.Posoc07g11800, gene.Posoc08g13080, gene.Posoc09g07380
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.57324.2, evm.TU.57325.2, evm.TU.Scaffold_7_RagTag.885 ... evm.TU.Scaffold_18_RagTag.557, evm.TU.Scaffold_4_RagTag.1928, evm.TU.Scaffold_6_RagTag.1734, evm.TU.Scaffold_8_RagTag.847
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-19348, nbisL1-mrna-27935, nbisL1-mrna-27953 ... nbisL1-mrna-818, nbisL1-mrna-9390
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-11579, nbisL1-mrna-1309, nbisL1-mrna-16303 ... nbisL1-mrna-17067, nbisL1-mrna-17635, nbisL1-mrna-3484, nbisL1-mrna-6952
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-12033, nbisL1-mrna-20577, nbisL1-mrna-2409 ... nbisL1-mrna-4698, nbisL1-mrna-6714, nbisL1-mrna-7970, nbisL1-mrna-8828
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000002l.682, evm.TU.utg000008l.1101 ... evm.TU.utg000011l.1056, evm.TU.utg000018l.238, evm.TU.utg000019l.547, evm.TU.utg000023l.123, evm.TU.utg000033l.556
Rhizophoraceae	Kandelia obovata	7	Maker00001192, Maker00002346, Maker00002870, Maker00007445 ... Maker00010768, Maker00015163, Maker00019097
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-11484, nbisL1-mrna-13081, nbisL1-mrna-14782 ... nbisL1-mrna-15412, nbisL1-mrna-16404, nbisL1-mrna-6168, nbisL1-mrna-7365
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-10133, nbisL1-mrna-1212, nbisL1-mrna-17069 ... nbisL1-mrna-17980, nbisL1-mrna-1848, nbisL1-mrna-21320, nbisL1-mrna-3351
Salicaceae	Populus euphratica	3	populus_peu02716, populus_peu32158, populus_peu33622
Solanaceae	Lycium barbarum	5	gene-LOC132603692, gene-LOC132604040, gene-LOC132627675 ... gene-LOC132633374, gene-LOC132636804
Solanaceae	Solanum chilense	3	SOLCI002323600, SOLCI003422200, SOLCI004345900
Solanaceae	Solanum pennellii	2	gene-LOC107005226, gene-LOC107012302
Tamaricaceae	Reaumuria soongarica	4	STRG.8866_chr03_-, gene_15590, gene_1813, gene_8019
Tamaricaceae	Tamarix chinensis	4	TC04G2788, TC09G0281, TC10G1441, TC11G0618
Zosteraceae	Zostera marina	2	Zosma01g06190.v3.1, Zosma05g13460.v3.1