Basic Information
Locus ID:
AgUnG01317
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein kinase superfamily protein with octicosapeptide Phox Bem1p domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg7290 | 75883 | 82606 | + | AgUnG01317 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 153,649.41 Da | 49.11 | 75.34 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 1128 | 1385 | 5.78815E-101 | - |
| CDD | cd06410 | PB1_UP2 | 155 | 253 | 1.25087E-45 | - |
| Pfam | PF00564 | PB1 domain | 171 | 254 | 3.1E-16 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1124 | 1385 | 1.2E-58 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1115 | 1384 | 5.68E-73 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 167 | 259 | 2.35E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1210 | 1410 | 3.1E-53 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 172 | 254 | 3.2E-12 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1115 | 1209 | 1.1E-23 | - |
| SMART | SM00220 | serkin_6 | 1122 | 1388 | 3.5E-53 | IPR000719 |
| SMART | SM00666 | PB1_new | 166 | 255 | 1.9E-28 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1122 | 1388 | 39.7215 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1247 | 1259 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1128 | 1159 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1312 | 1334 | 8.4E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1241 | 1259 | 8.4E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1204 | 1217 | 8.4E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1356 | 1378 | 8.4E-14 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 758 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 771 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46920.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_017246902.1 | PREDICTED: uncharacterized protein LOC108218467 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L5B7Y0 | Protein kinase domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_028821 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.343528 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.691718 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.572247 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.044663 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.600815 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.972725 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.924295 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.00855 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.50305 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.128986 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.873672 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.077337 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.57692 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 23.010788 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.051403 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.258908 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.806503 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.680649 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.268513 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.785937 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.574845 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.970732 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.466387 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.887028 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.138152 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.444273 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.340237 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.014699 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.303983 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 8.125851 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.922434 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.934745 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.977852 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.647128 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.938042 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.696797 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.905151 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.510568 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.772099 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.281113 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.682248 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.066692 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.146333 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.589939 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.599362 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.26852 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 9.698527 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.30875 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.633478 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.578054 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31584 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10572 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014190 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g189770, BVRB_8g192730 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011096 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41857, Sgl46659 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009375, gene:ENSEOMG00000030482 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0023300, CQ.Regalona.r1.8BG0019070 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179690 |
| Apiaceae | Apium graveolens | 6 | Ag11G04251, Ag2G02869, Ag3G02723, Ag4G01359, Ag4G02866 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G005630, COCNU_01G010200, COCNU_11G008220 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703666, gene-LOC103706458, gene-LOC103715979 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.94.V1.1, AsparagusV1_05.3319.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G11468 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G46920.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2493 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2630 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g06700, gene.Cymno02g05410 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g09140 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.120 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000991 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G03774, Lb3G20127, Lb7G35244 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2451, AH06.540, BH06.2249, BH06.587, CH06.2475 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_6AG0511090, gene-QOZ80_6AG0546370 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0658560.1, HORVU.MOREX.r3.7HG0744210.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028258, gene-QYE76_036653 |
| Poaceae | Oryza coarctata | 4 | Oco11G003700, Oco11G013840, Oco12G003700, Oco12G014030 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g08280.1, LOC_Os06g43840.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G063900, gene-BS78_10G207400 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0207123, Pt_Chr0401563, Pt_Chr0405273, Pt_Ctg00035 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G030890, Chr05G008600, Chr0G000080, Chr10G019000 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G295500, Tel7E01G881100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC7AG017680, gene_TRIDC7AG071830 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G145100.1, TraesCS7A02G511900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb268080_P004, Zm00001eb374870_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40901, nbis-gene-5019 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29222, Zma_g33143 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1104, evm.TU.LG05.1648 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g23910, gene.Posoc03g12130 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.114, evm.TU.Scaffold_4_RagTag.2226 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25248 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13162, nbisL1-mrna-21292 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-16550, nbisL1-mrna-16551, nbisL1-mrna-16552 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1308 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000803 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1875, nbisL1-mrna-23539 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22261 |
| Salicaceae | Populus euphratica | 3 | populus_peu05652, populus_peu05653, populus_peu12286 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603070 |
| Solanaceae | Solanum chilense | 1 | SOLCI007338600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026002 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8132 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1133 |
| Zosteraceae | Zostera marina | 1 | Zosma03g01840.v3.1 |