Basic Information
Locus ID:
AgUnG01263
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
tRNA 2'-phosphotransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg6980 | 4548 | 9714 | - | AgUnG01263 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 33,671.93 Da | 39.77 | 83.38 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01885 | RNA 2'-phosphotransferase, Tpt1 / KptA family | 63 | 243 | 2.8E-61 | IPR002745 |
| SUPERFAMILY | SSF56399 | ADP-ribosylation | 65 | 246 | 1.22E-44 | - |
| Gene3D | G3DSA:1.10.10.970 | - | 61 | 141 | 9.3E-17 | IPR042080 |
| Gene3D | G3DSA:3.20.170.30 | - | 167 | 263 | 6.5E-25 | IPR042081 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45330.2 | RNA 2'-phosphotransferase, Tpt1 / KptA family. | 0 |
| RefSeq | XP_017237015.1 | PREDICTED: tRNA 2'-phosphotransferase 1 [Daucus carota subsp. sativus] | 0 |
| O14045 | Putative tRNA 2'-phosphotransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC2C4.12c PE=3 SV=2 | 0 | |
| TrEMBL | A0A6L5BAU8 | 2'-phosphotransferase OS=Apium graveolens OX=4045 GN=AG4045_000099 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.858819 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.443041 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.623144 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.619202 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.112239 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.179225 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.586693 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.086284 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.973461 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.420529 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.905501 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.195855 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.01946 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.257115 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.725258 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.736009 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.656546 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.426742 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.72002 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.784398 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.827898 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.048353 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.301013 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.915477 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.058622 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.05327 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.435574 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.646085 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.397686 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.156321 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.552955 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.769842 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.705385 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.989057 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.637374 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.474519 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.016333 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.136946 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.369162 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.097736 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.168395 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.638349 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.693228 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.555227 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.607587 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.254103 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.614633 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.564425 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.085788 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.449182 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29682 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1347 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023194 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4304, Sbi_jg49517 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5728 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000282 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11287, Sgl16680 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016325, gene:ENSEOMG00000026899 ... |
| Amaranthaceae | Chenopodium quinoa | 8 | CQ.Regalona.r1.1AG0006390, CQ.Regalona.r1.1AG0017630 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30000920, pistato.v30002830 |
| Apiaceae | Apium graveolens | 4 | Ag6G00120, AgUnG00663, AgUnG01263, AgUnG01270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723773 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1310.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G15639, Ftri15G26951 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G45330.1, AT5G23600.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001570m.g.v1.0, Thhalv10019720m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g05260.v2.2, Sp4g27360.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g001570.2N, BniB03g051030.2N, BniB06g003700.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0512 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0534 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g04980 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0149s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g09350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.171 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00018706, Pov_00018709, Pov_00028846, Pov_00032708 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22208 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.1674, AH06.121, BH02.2206, BH06.223, CH06.206 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0507600, gene-QOZ80_6BG0459680 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0645480.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027681 |
| Poaceae | Oryza coarctata | 1 | Oco11G001700 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g04300.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G285900, gene-BS78_10G025900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401985 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G001270, Chr21G000360 |
| Poaceae | Thinopyrum elongatum | 4 | Tel6E01G543100, Tel7E01G149900, Tel7E01G150300 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG068410, gene_TRIDC2BG012070 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G485300.1, TraesCS3D02G058800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb244410_P002, Zm00001eb377990_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-53839 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31300 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.782, evm.TU.LG24.782 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc07g07060, gene.Posoc07g07070, gene.Posoc09g01590 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.168 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.100 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010566 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9728 |
| Salicaceae | Populus euphratica | 2 | populus_peu16452, populus_peu32072 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132645714, gene-LOC132645717 |
| Solanaceae | Solanum chilense | 1 | SOLCI003070700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008178 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.9976_chr06_+, gene_14186 |
| Tamaricaceae | Tamarix chinensis | 4 | TC01G1851, TC09G0050, TC09G2084, TC11G2317 |
| Zosteraceae | Zostera marina | 1 | Zosma06g05210.v3.1 |