Basic Information
Locus ID:
AgUnG01257
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg6880 | 42798 | 60793 | - | AgUnG01257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 62,067.24 Da | 38.95 | 74.89 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.60.40.2700 | - | 331 | 418 | 3.4E-9 | - |
| Coils | Coil | Coil | 75 | 95 | - | - |
| Coils | Coil | Coil | 110 | 130 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03560.1 | 0 | |
| RefSeq | XP_017226857.1 | PREDICTED: uncharacterized protein LOC108202820 isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5B827 | GTD-binding domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_006992 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 16.570883 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.511399 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.045234 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.421587 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.137951 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.060065 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.384312 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.928164 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 30.452021 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.297956 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 40.32497 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.936653 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 33.502815 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 21.330324 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 28.767231 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 31.584806 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 28.049763 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 49.392509 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 35.155376 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 49.12677 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 61.557163 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 30.856472 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 30.935127 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.75762 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 29.974724 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 35.470497 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 35.428291 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 33.63319 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 37.832108 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.650702 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.719324 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.463801 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.671039 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.934315 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.896607 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.830162 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.716043 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.26773 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.87817 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 30.682142 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 20.504734 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 85.686562 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 52.251404 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 38.964043 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 37.564209 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 91.122276 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 45.602203 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 26.956131 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 30.38727 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 25.027189 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1698, jg29111 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1252 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023387 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29074, Sbi_jg3297 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6639 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000111 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11474, Sgl16874 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000014809, gene:ENSEOMG00000035619 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0008220, CQ.Regalona.r1.2BG0021190 |
| Apiaceae | Apium graveolens | 1 | AgUnG01257 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G003860 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711776 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_10.356.V1.1, AsparagusV1_10.357.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G25284, Ftri7G20751 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G03560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022176m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02540.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g034080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1514 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1546 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g00160 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g07120 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7989 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1876, evm.TU.LG08.968 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016929 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1828, AH06.2812, BH05.1993 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0011550, gene-QOZ80_1BG0060190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0734460.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G021350, Oco06G022150 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g49960.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G227100, gene-BS78_K111100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401229 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G019790, Chr03G005260, Chr05G010800, Chr08G005780 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G774900, Tel7E01G858100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG063680, gene_TRIDC7BG057310 |
| Poaceae | Triticum aestivum | 4 | TraesCS7A02G458000.1, TraesCS7B02G358300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb220630_P002, Zm00001eb390260_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13160 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10042, Zma_g7699 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1735, evm.TU.LG10.1226 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g00520 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.503, evm.TU.Scaffold_1_RagTag.505 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7659 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16004, nbisL1-mrna-337 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13940, nbisL1-mrna-5532 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.249, evm.TU.utg000012l.311 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005387, Maker00011138 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12782, nbisL1-mrna-8484 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16419, nbisL1-mrna-644 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636089 |
| Solanaceae | Solanum chilense | 1 | SOLCI002169700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002582 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01380.v3.1 |