Basic Information
Locus ID:
AgUnG01243
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg6694 | 55973 | 59751 | + | AgUnG01243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 74,352.85 Da | 32.75 | 82.35 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 90 | 355 | 2.2E-22 | IPR000719 |
| Pfam | PF00504 | Chlorophyll A-B binding protein | 473 | 652 | 1.1E-46 | IPR022796 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 86 | 357 | 1.05E-35 | IPR011009 |
| SUPERFAMILY | SSF103511 | Chlorophyll a-b binding protein | 461 | 678 | 3.4E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 51 | 137 | 9.5E-8 | - |
| Gene3D | G3DSA:1.10.3460.10 | Chlorophyll a/b binding protein domain | 463 | 681 | 6.9E-66 | IPR023329 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 138 | 359 | 7.3E-28 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 50 | 355 | 23.721811 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61520.1 | photosystem I light harvesting complex gene 3. PSI type III chlorophyll a/b-binding protein (Lhca3*1) | 0 |
| RefSeq | XP_017246672.1 | PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q9SY97 | Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L5B7P7 | Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens OX=4045 GN=AG4045_003892 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.834516 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.173979 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.121402 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.478855 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.569868 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.076476 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.028449 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.810225 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.185846 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.153954 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 19.280319 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.095461 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.534513 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.367394 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 37.517307 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 47.540752 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 36.143166 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 118.218323 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 40.76725 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 36.560604 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.434088 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.389399 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.698523 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 54.412971 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 44.107994 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 58.384529 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 147.142761 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 39.487801 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 367.490662 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 364.438934 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 332.427124 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 95.033203 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 48.989021 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 74.267181 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 91.992004 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 276.213074 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 174.601776 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 617.229187 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 881.747742 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 325.725616 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.099388 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.768955 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.84426 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.584981 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.371264 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.663884 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.554494 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.458543 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.078729 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19216 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8642 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035892 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39861, Sbi_jg55195 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14467 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014235 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12359, Sgl17638 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017960, gene:ENSEOMG00000036011 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0023110, CQ.Regalona.r1.1BG0001110 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30101810, pistato.v30112040 |
| Apiaceae | Apium graveolens | 3 | Ag2G02233, AgUnG00498, AgUnG01243 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G006920, COCNU_01G012850 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103718458, gene-LOC120112142 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2124.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G11256 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G61520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023636m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g03060.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g059370.2N, BniB04g020930.2N, BniB07g047370.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2941, Ceq02G2954 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G3068, Cgl03G0479 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07640 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0027s00003.v1.0, Dusal.0027s00004.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g27440 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.812 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008337, Pov_00008339 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30997 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2269, BH07.3989, CH06.2291 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0544770, gene-QOZ80_6BG0498280 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021341 |
| Poaceae | Oryza coarctata | 2 | Oco03G004870, Oco04G005060 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g10390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G189000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202120 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr05G007810, Chr0G005680, Chr10G017910, Chr11G004710 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G331000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG028780 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G159800.1, TraesCS6B02G191500.1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10052, nbis-gene-41037 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30808, Zma_g33057 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1073, evm.TU.LG22.814 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g16670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1678 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14367, nbisL1-mrna-3389 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10848, nbisL1-mrna-21435 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.905, evm.TU.utg000006l.965 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009805, Maker00013273 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13895 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15607, nbisL1-mrna-4633 |
| Salicaceae | Populus euphratica | 1 | populus_peu26841 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132629504, gene-LOC132636547 |
| Solanaceae | Solanum chilense | 2 | SOLCI000988100, SOLCI005200100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002211, gene-LOC107007169 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.22943_chr05_-, gene_2174, gene_8148 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2682 |
| Zosteraceae | Zostera marina | 1 | Zosma01g28630.v3.1 |