Basic Information
Locus ID:
AgUnG01142
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ubiquitin associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg6252 | 32249 | 37734 | + | AgUnG01142 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 63,362.94 Da | 48.69 | 91.50 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18037 | Ubiquitin-like domain | 16 | 75 | 8.6E-6 | IPR041207 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 21 | 75 | 8.98E-8 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 418 | 459 | 7.15E-5 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 359 | 399 | 2.44E-6 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 262 | 325 | 1.95E-9 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 13 | 82 | 3.2E-8 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 289 | 327 | 4.7E-8 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 363 | 399 | 1.0E-5 | - |
| SMART | SM00165 | uba_6 | 421 | 457 | 4.9 | IPR015940 |
| SMART | SM00165 | uba_6 | 289 | 326 | 8.7E-4 | IPR015940 |
| SMART | SM00165 | uba_6 | 361 | 398 | 0.13 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 74 | 1.4E-4 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 359 | 399 | 10.787806 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 416 | 458 | 9.149202 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 287 | 327 | 11.197456 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 23 | 70 | 10.309861 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 508 | - | - |
| Coils | Coil | Coil | 509 | 529 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G12550.1 | ubiquitin-associated (UBA)/TS-N domain-containing protein. | 0 |
| RefSeq | XP_017248489.1 | PREDICTED: NEDD8 ultimate buster 1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5B7Y4 | NEDD8 ultimate buster 1 OS=Apium graveolens OX=4045 GN=AG4045_000123 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.470592 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.756744 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.595348 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.617373 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.106863 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.330948 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.836164 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.065607 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 25.118738 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 33.505379 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 33.212811 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.41398 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.526247 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 22.184086 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.796832 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.249807 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.650214 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.939999 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.857261 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.876174 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.416773 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.524876 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.649147 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.493828 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.557741 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.671372 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.230077 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.407233 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.172317 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.419101 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.00407 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.761231 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.717124 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.239034 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 19.456812 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.925935 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.535494 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.378491 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.695811 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.671174 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.538981 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.576358 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.805189 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.807003 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.352018 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.181713 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 33.451809 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.346308 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.554943 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.490494 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15551 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10580 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014226, Ah014425 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25505, Sbi_jg9340 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19264 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011069 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41887, Sgl46689 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008964, gene:ENSEOMG00000030455 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7BG0021410, CQ.Regalona.r1.8AG0023030 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30261870, pistato.v30262260 |
| Apiaceae | Apium graveolens | 4 | Ag1G00651, Ag2G01806, Ag3G02731, AgUnG01142 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G017540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715908 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.332.V1.1, AsparagusV1_03.56.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G10033 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G12550.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001944m.g.v1.0, Thhalv10022623m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g26680.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g011240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1427 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1489 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g16910 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0005s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g04480 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.622 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001069 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32017 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2484, BH09.2704, CH09.2902 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0301910, gene-QOZ80_4BG0332650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0205540.1 |
| Poaceae | Oryza coarctata | 1 | Oco08G016750 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g55150.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G256200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300790, Pt_Chr0300807 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G002620, Chr25G002090, Chr26G016720, Chr30G002060 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G881500, Tel4E01G045200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG072760, gene_TRIDC2BG078960 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G518400.1, TraesCS2B02G546800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb068670_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22995, nbis-gene-22996 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20545 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g04480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2256 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6633 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4999 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1319 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000556 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1862 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22284 |
| Salicaceae | Populus euphratica | 3 | populus_peu05677, populus_peu11041, populus_peu11064 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603092 |
| Solanaceae | Solanum chilense | 1 | SOLCI004481300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024036 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9013 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1167 |