halophFGD

Basic Information

Locus ID: AgUnG01106

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: U-box domain-containing protein 21-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg606	19236	20868	-	AgUnG01106

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.80	49,927.92 Da	44.17	101.62	-0.10

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16664	RING-Ubox_PUB	33	75	5.00506E-24	-
Pfam	PF04564	U-box domain	29	100	2.6E-21	IPR003613
SUPERFAMILY	SSF48371	ARM repeat	120	423	8.35E-24	IPR016024
SUPERFAMILY	SSF57850	RING/U-box	19	105	3.85E-30	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	2	106	1.8E-28	IPR013083
Gene3D	G3DSA:1.25.10.10	-	115	419	7.1E-23	IPR011989
SMART	SM00504	Ubox_2	32	95	2.2E-31	IPR003613
ProSiteProfiles	PS51698	U-box domain profile.	28	102	38.834389	IPR003613

Gene Ontology

Biological Process:

GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G37490.1	ARM repeat superfamily protein.
RefSeq	XP_017216294.1	PREDICTED: U-box domain-containing protein 21-like [Daucus carota subsp. sativus]
Swiss-Prot	Q5PNY6	U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1
TrEMBL	A0A6L5B8K6	RING-type E3 ubiquitin transferase OS=Apium graveolens OX=4045 GN=AG4045_021933 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.229127	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.074447	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.022314	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.179486	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.474061	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.060871	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.972155	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	19.281935	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	15.105918	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	12.236579	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	3.769526	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	5.350889	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.217261	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	6.723234	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	7.532664	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	17.783073	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	3.791144	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	44.857925	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	24.398184	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	3.997647	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	4.531052	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	2.114059	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	3.549693	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.08056	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.14647	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.100098		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.07974		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.233539		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	10.482469		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.828802		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	20.453127		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.700727		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.131619		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.245041		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.136037	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.509306	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.898621	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	118.624527	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	119.106697	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	25.976799	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	5.584805	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	118.343353	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	21.142305	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	34.770676	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.347899	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.888119	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17105, jg30918, jg31023, jg34745
Aizoaceae	Mesembryanthemum crystallinum	1	gene_185
Amaranthaceae	Atriplex hortensis	1	Ah017785
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg25927, Sbi_jg9765
Amaranthaceae	Salicornia europaea	1	Seu_jg18904
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00023828
Amaranthaceae	Suaeda glauca	2	Sgl45664, Sgl46457
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000010992, gene:ENSEOMG00000032953 ... gene:ENSEOMG00000046263
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0003230, CQ.Regalona.r1.8BG0003370
Anacardiaceae	Pistacia vera	12	pistato.v30109860, pistato.v30109870, pistato.v30148810 ... pistato.v30148820, pistato.v30294450, pistato.v30294460, pistato.v30294470, pistato.v30294480, pistato.v30294970, pistato.v30294980, pistato.v30294990, pistato.v30295000
Apiaceae	Apium graveolens	6	Ag3G01626, Ag4G01374, Ag5G01920, Ag8G01891, Ag9G02067 ... AgUnG01106
Arecaceae	Cocos nucifera	3	COCNU_03G003130, COCNU_05G009360, COCNU_06G007070
Arecaceae	Phoenix dactylifera	5	gene-LOC103700874, gene-LOC103711110, gene-LOC103713384 ... gene-LOC103723464, gene-LOC120111655
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.1581.V1.1
Asteraceae	Flaveria trinervia	5	Ftri17G28367, Ftri6G20421, Ftri8G23647, Ftri9G34047 ... FtriNA14261
Brassicaceae	Arabidopsis thaliana	3	AT1G66160.1, AT3G02840.1, AT5G37490.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10018597m.g.v1.0, Thhalv10020937m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g01870.v2.2, SpUn0331_0010.v2.2
Brassicaceae	Brassica nigra	4	BniB01g024170.2N, BniB01g061430.2N, BniB05g061990.2N ... BniB07g034320.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G2792, Ceq04G0558, Ceq08G0609, Ceq09G0788
Casuarinaceae	Casuarina glauca	4	Cgl03G2946, Cgl04G0663, Cgl08G0577, Cgl09G0855
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno05g11630, gene.Cymno11g08860
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g11490
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11884
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1240, evm.TU.LG10.38
Plantaginaceae	Plantago ovata	1	Pov_00021167
Plumbaginaceae	Limonium bicolor	2	Lb0G37346, Lb1G04112
Poaceae	Echinochloa crus-galli	10	AH01.2614, AH01.4383, AH07.3398, BH01.2964, BH06.1044 ... BH07.3233, CH01.3157, CH01.5004, CH07.3283, Contig192.23
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_2AG0144950, gene-QOZ80_2BG0200460 ... gene-QOZ80_3AG0240350, gene-QOZ80_6AG0515620, gene-QOZ80_6BG0467360
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0393050.1.CDS1 ... HORVU.MOREX.r3.6HG0616340.1.CDS1, HORVU.MOREX.r3.7HG0668940.1.CDS1
Poaceae	Lolium multiflorum	3	gene-QYE76_024966, gene-QYE76_029065, gene-QYE76_069372
Poaceae	Oryza coarctata	7	Oco03G021080, Oco04G021730, Oco05G007710, Oco06G008010 ... Oco11G006550, Oco12G006660, Oco20G000440
Poaceae	Oryza sativa	6	LOC_Os01g57735.1, LOC_Os02g50460.1, LOC_Os03g13740.1 ... LOC_Os06g13870.1, LOC_Os06g30330.1, LOC_Os10g03440.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G265100, gene-BS78_01G422800 ... gene-BS78_04G271600, gene-BS78_05G281400
Poaceae	Sporobolus alterniflorus	11	Chr01G029030, Chr04G000570, Chr06G002690, Chr09G020650 ... Chr0G000460, Chr11G018690, Chr12G010480, Chr13G004860, Chr14G004930, Chr15G004030, Chr21G004380
Poaceae	Thinopyrum elongatum	4	Tel3E01G873600, Tel4E01G396900, Tel6E01G558000 ... Tel7E01G366300
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG010190, gene_TRIDC4BG040420 ... gene_TRIDC6AG047050, gene_TRIDC6BG054830, gene_TRIDC7AG025290, gene_TRIDC7BG015520
Poaceae	Triticum aestivum	7	TraesCS4B02G228700.1.cds1, TraesCS4D02G229900.1.cds1 ... TraesCS6A02G312600.1.cds1, TraesCS6B02G342800.1.cds1, TraesCS6D02G292200.1.cds1, TraesCS7B02G105600.1.cds1, TraesCS7D02G201600.1.cds1
Poaceae	Zea mays	4	Zm00001eb010210_P001, Zm00001eb026100_P001 ... Zm00001eb253960_P001, Zm00001eb371590_P001
Poaceae	Zoysia japonica	4	nbis-gene-21903, nbis-gene-2331, nbis-gene-3922 ... nbis-gene-8777
Poaceae	Zoysia macrostachya	5	Zma_g14385, Zma_g1683, Zma_g17102, Zma_g31679, Zma_g4053
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.1743, evm.TU.LG14.972, evm.TU.LG18.773 ... evm.TU.LG20.1134
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g08320, gene.Posoc01g24800, gene.Posoc08g01370
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_11_RagTag.764, evm.TU.Scaffold_15_RagTag.277 ... evm.TU.Scaffold_17_RagTag.740, evm.TU.Scaffold_3_RagTag.787, evm.TU.Scaffold_4_RagTag.670, evm.TU.Scaffold_6_RagTag.1322
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-14439, nbisL1-mrna-16318, nbisL1-mrna-23433 ... nbisL1-mrna-28693
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-17201, nbisL1-mrna-3269, nbisL1-mrna-876
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-1163, nbisL1-mrna-12373, nbisL1-mrna-1695 ... nbisL1-mrna-20074
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000008l.154, add.evm.TU.utg000011l.331 ... add.evm.TU.utg000013l.136, add.evm.TU.utg000061l.11
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-17108, nbisL1-mrna-21032, nbisL1-mrna-21312 ... nbisL1-mrna-22186, nbisL1-mrna-22591
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14308, nbisL1-mrna-1632, nbisL1-mrna-3912 ... nbisL1-mrna-8434
Salicaceae	Populus euphratica	6	populus_peu07240, populus_peu09694, populus_peu21240 ... populus_peu24824, populus_peu28177, populus_peu29668
Solanaceae	Lycium barbarum	3	gene-LOC132613786, gene-LOC132613958, gene-LOC132625844
Solanaceae	Solanum chilense	3	SOLCI000844400, SOLCI001079400, SOLCI001442700
Solanaceae	Solanum pennellii	3	gene-LOC107004140, gene-LOC107017233, gene-LOC107029927
Tamaricaceae	Tamarix chinensis	1	TC05G0944
Zosteraceae	Zostera marina	1	Zosma01g30390.v3.1