Basic Information
Locus ID:
AgUnG01103
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg6038 | 61480 | 81915 | - | AgUnG01103 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 131,504.66 Da | 36.85 | 108.29 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 894 | 1162 | 2.6E-42 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 67 | 3.3E-6 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 456 | 516 | 2.4E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 732 | 788 | 1.9E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 657 | 716 | 9.5E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 98 | 156 | 6.4E-10 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 454 | 796 | 1.26E-62 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 196 | 450 | 9.35E-58 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 39 | 234 | 1.75E-45 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 867 | 1165 | 7.28E-70 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 394 | 454 | 1.1E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 455 | 522 | 6.0E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 523 | 829 | 8.0E-90 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 191 | 393 | 1.6E-60 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 187 | 8.9E-47 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 855 | 968 | 1.1E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 969 | 1187 | 3.1E-59 | - |
| SMART | SM00365 | LRR_sd22_2 | 432 | 447 | 710.0 | - |
| SMART | SM00369 | LRR_typ_2 | 143 | 167 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 455 | 479 | 8.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 455 | 481 | 16.0 | - |
| SMART | SM00369 | LRR_typ_2 | 655 | 679 | 0.47 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 631 | 657 | 160.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 95 | 118 | 530.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 360 | 386 | 150.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 751 | 772 | 270.0 | - |
| SMART | SM00369 | LRR_typ_2 | 119 | 142 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 607 | 631 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 95 | 118 | 210.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 191 | 217 | 580.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 336 | 355 | 62.0 | - |
| SMART | SM00369 | LRR_typ_2 | 751 | 774 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 503 | 526 | 360.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 384 | 408 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 191 | 215 | 57.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 288 | 312 | 280.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 893 | 1173 | 2.5E-29 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 893 | 1173 | 35.424763 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 899 | 921 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1012 | 1024 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47090.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017244443.1 | PREDICTED: putative receptor-like protein kinase At3g47110 [Daucus carota subsp. sativus] | 0 |
| Q9SD62 | Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana OX=3702 GN=At3g47110 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6L5B8B2 | Protein kinase domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_029846 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.422647 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.661541 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.370341 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.103406 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.71041 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.318751 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.080842 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.833122 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.586895 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.41476 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.501864 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.466154 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.464587 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.211732 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.418734 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.370111 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.953714 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.703846 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.005117 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.657629 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.56187 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.009808 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.037134 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.218222 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.812589 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.115426 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.571171 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.680496 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.312475 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.443611 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.429597 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.496483 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.041037 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.383106 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.125436 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.051087 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.073414 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.63195 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.903282 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.234654 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.883584 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.865927 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.826688 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.496416 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.74967 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.895242 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.392818 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.195747 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.496547 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology