halophFGD

Basic Information

Locus ID: AgUnG01095

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Domain of unknown function DUF223

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg5971	86551	90822	-	AgUnG01095

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.86	38,758.82 Da	40.19	93.31	-0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Gene3D	G3DSA:2.40.50.140	-	76	236	3.6E-7	-
MobiDBLite	mobidb-lite	consensus disorder prediction	315	353	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	315	331	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017245331.1	PREDICTED: replication factor A protein 1-like [Daucus carota subsp. sativus]	0
TrEMBL	A0A6L5B8C1	REPA_OB_2 domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_019373 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	3.031539	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.328918	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.988982	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.162643	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.662262	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.583321	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.012201	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.217064	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	3.230472	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	3.688298	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.367359	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	4.372398	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	3.927668	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.319738	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	3.460781	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.435279	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.753689	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.085435	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.659359	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.444947	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.780506	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	4.092311	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	5.118108	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	4.788038	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	4.886559	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.958707	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.636055	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.417919	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.430434	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.181736		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.446568		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.225079		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.007028		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.37245		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.916223		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.307667		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.259628		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.905602		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.548955	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.906258	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.553917	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.863833	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.308545	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	5.313253	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	7.273016	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	2.749818	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	3.579344	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	7.79582	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	10.350227	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.941487	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	3	gene_11242, gene_19988, gene_9588
Amaranthaceae	Atriplex hortensis	13	Ah001361, Ah001371, Ah002563, Ah006984, Ah006985, Ah007876 ... Ah010862, Ah025226, Ah029290, Ah030577, Ah037589, Ah038029, Ah038313
Amaranthaceae	Salicornia bigelovii	19	Sbi_jg149, Sbi_jg150, Sbi_jg16705, Sbi_jg3120, Sbi_jg33012 ... Sbi_jg34953, Sbi_jg39132, Sbi_jg40907, Sbi_jg40945, Sbi_jg4372, Sbi_jg52704, Sbi_jg52799, Sbi_jg56535, Sbi_jg59927, Sbi_jg6013, Sbi_jg6051, Sbi_jg6079, Sbi_jg6080, Sbi_jg62897
Amaranthaceae	Salicornia europaea	16	Seu_jg10453, Seu_jg17430, Seu_jg17914, Seu_jg1932 ... Seu_jg19683, Seu_jg20729, Seu_jg21730, Seu_jg23726, Seu_jg24231, Seu_jg24232, Seu_jg25610, Seu_jg26476, Seu_jg28167, Seu_jg3128, Seu_jg5300, Seu_jg6452
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00024462
Amaranthaceae	Suaeda glauca	10	Sgl03380, Sgl08498, Sgl31135, Sgl31147, Sgl32416, Sgl36490 ... Sgl37710, Sgl44281, Sgl49042, Sgl74206
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000005026, gene:ENSEOMG00000015694 ... gene:ENSEOMG00000015873, gene:ENSEOMG00000034435
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.2AG0003620, CQ.Regalona.r1.8BG0010240
Apiaceae	Apium graveolens	27	Ag10G01033, Ag10G01574, Ag10G01896, Ag11G03153, Ag11G04618 ... Ag1G01595, Ag1G01599, Ag2G00391, Ag2G01149, Ag2G01625, Ag3G01857, Ag3G01971, Ag3G02116, Ag3G02639, Ag3G02752, Ag4G02157, Ag5G01058, Ag5G01367, Ag6G02577, Ag7G00861, Ag7G00882, Ag9G01197, Ag9G02116, Ag9G02235, AgUnG00818, AgUnG01095, AgUnG01450
Arecaceae	Cocos nucifera	2	COCNU_13G005920, scaffold010294G000060
Poaceae	Echinochloa crus-galli	7	AH01.5146, BH01.1939, BH02.822, BH09.2202, BH09.2414 ... CH01.2160, CH02.811
Poaceae	Oryza coarctata	1	Oco15G006230
Poaceae	Oryza sativa	8	LOC_Os05g02080.1, LOC_Os11g01460.1, LOC_Os11g38310.1 ... LOC_Os11g41180.1, LOC_Os11g44840.1, LOC_Os11g47400.1, LOC_Os12g26670.1, LOC_Os12g38520.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G191500, gene-BS78_05G005400 ... gene-BS78_05G239400, gene-BS78_05G271300, gene-BS78_05G282000
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0201723, Pt_Chr0201724, Pt_Chr0201726, Pt_Chr0201806 ... Pt_Chr0501697, Pt_Chr0501742, Pt_Chr0602034
Poaceae	Sporobolus alterniflorus	2	Chr19G015510, Chr27G003730
Poaceae	Thinopyrum elongatum	10	Tel1E01G147700, Tel1E01G147800, Tel1E01G242200 ... Tel1E01G245800, Tel1E01G253400, Tel2E01G486300, Tel4E01G387800, Tel6E01G338100, Tel7E01G398200, Telscf1201G000300
Poaceae	Triticum dicoccoides	6	gene_TRIDC1BG023090, gene_TRIDC2AG046570 ... gene_TRIDC3AG028860, gene_TRIDC5BG032950, gene_TRIDC6BG030650, gene_TRIDC7BG033130
Solanaceae	Lycium barbarum	3	gene-LOC132600651, gene-LOC132619582, gene-LOC132621884
Solanaceae	Solanum chilense	7	SOLCI000818800, SOLCI000928800, SOLCI004930500 ... SOLCI004985800, SOLCI005662500, SOLCI006437700, SOLCI007519000
Solanaceae	Solanum pennellii	6	gene-LOC107003768, gene-LOC107019434, gene-LOC107019527 ... gene-LOC107020428, gene-LOC107024868, gene-LOC114077490