Basic Information
Locus ID:
AgUnG01076
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg5824 | 130570 | 144363 | - | AgUnG01076 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 52,419.32 Da | 44.36 | 86.63 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16119 | UBX_UBXN6 | 362 | 440 | 3.0151E-23 | - |
| CDD | cd09212 | PUB | 186 | 268 | 5.85613E-19 | - |
| Pfam | PF09409 | PUB domain | 187 | 256 | 1.8E-15 | IPR018997 |
| Pfam | PF00789 | UBX domain | 358 | 412 | 1.2E-5 | IPR001012 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 329 | 439 | 2.84E-12 | IPR029071 |
| SUPERFAMILY | SSF143503 | PUG domain-like | 187 | 264 | 2.75E-17 | IPR036339 |
| Gene3D | G3DSA:1.20.58.2190 | - | 185 | 267 | 2.0E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 352 | 441 | 1.0E-6 | - |
| SMART | SM00580 | PGNneu | 187 | 254 | 1.9E-11 | - |
| ProSiteProfiles | PS50033 | UBX domain profile. | 357 | 439 | 11.016978 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 107 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01650.1 | plant UBX domain-containing protein 2. encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo. | 0 |
| RefSeq | XP_017231478.1 | PREDICTED: plant UBX domain-containing protein 2 [Daucus carota subsp. sativus] | 0 |
| Q9ZU93 | Plant UBX domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUX2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6L5B8D6 | UBX domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_010030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.115205 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.40971 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.899992 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.363599 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.286678 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.604872 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.555036 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.002701 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.909986 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.037133 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.59498 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.546745 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.442257 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.359795 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.54922 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.176458 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.717225 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.204586 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.693333 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 29.401669 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 31.784637 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.465579 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.372883 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.695374 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.782012 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.197474 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.796693 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.621107 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.939535 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 13.163003 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 15.2845 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 15.387958 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 21.657372 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 19.210066 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 34.559181 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 20.396994 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 16.291199 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 16.280264 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.028796 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 20.369146 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.15658 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 21.37833 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.711311 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.381134 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.082109 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 21.103985 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.376764 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.322406 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.653782 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.434206 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg5144, jg7358, jg7359 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027416 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g127220 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13056, Sbi_jg13064, Sbi_jg52822 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg9053, Seu_jg9059 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010196 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33909, Sgl39276 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000003613, gene:ENSEOMG00000027998 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0025310, CQ.Regalona.r1.6BG0026830 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30218070 |
| Apiaceae | Apium graveolens | 1 | AgUnG01076 |
| Arecaceae | Cocos nucifera | 1 | scaffold001332G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717028 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1400.V1.1, AsparagusV1_06.513.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G05668 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G01650.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004151m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g13100.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g064940.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0836 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0908 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g04790, gene.Cymno09g02650 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0652s00010.v1.0, Dusal.1189s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g24150 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1285 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033232 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01428 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1861, BH03.2063, CH03.2211 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0534690, gene-QOZ80_6BG0487870 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0479200.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005022, gene-QYE76_016472 |
| Poaceae | Oryza coarctata | 2 | Oco17G004420, Oco18G004420 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g43570.1, LOC_Os09g23690.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G178100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702272 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G010450, Chr14G013520, Chr21G012710 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G340700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG033040, gene_TRIDC5BG034910 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G204800.1, TraesCS5D02G211300.1 |
| Poaceae | Zea mays | 2 | Zm00001eb099250_P001, Zm00001eb312180_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30891 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30285 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.225, evm.TU.LG04.1036, evm.TU.LG05.1221 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g00460 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.773 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23480 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8226 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20043 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.426 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004431 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10821 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14266 |
| Salicaceae | Populus euphratica | 1 | populus_peu07205 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625875 |
| Solanaceae | Solanum chilense | 1 | SOLCI002207400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010276 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10204 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2214 |
| Zosteraceae | Zostera marina | 1 | Zosma01g09890.v3.1 |