Basic Information
Locus ID:
AgUnG01069
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Putative zinc finger in N-recognin (UBR box)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg5809 | 78119 | 94953 | - | AgUnG01069 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 230,874.95 Da | 48.74 | 92.56 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16482 | RING-H2_UBR1_like | 1427 | 1487 | 3.61097E-24 | - |
| Pfam | PF02207 | Putative zinc finger in N-recognin (UBR box) | 125 | 191 | 6.7E-19 | IPR003126 |
| Pfam | PF18995 | Proteolysis_6 C-terminal | 1584 | 2042 | 7.0E-98 | IPR044046 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 869 | 953 | 7.62E-5 | IPR036390 |
| Gene3D | G3DSA:2.10.110.30 | - | 125 | 193 | 4.0E-23 | - |
| SMART | SM00396 | push_1 | 123 | 192 | 1.2E-20 | IPR003126 |
| ProSiteProfiles | PS51157 | Zinc finger UBR-type profile. | 123 | 193 | 10.59668 | IPR003126 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1393 | 1413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1140 | 1155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1134 | 1155 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02310.1 | proteolysis 6. Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. | 0 |
| RefSeq | XP_017241254.1 | PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4KCC2 | E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana OX=3702 GN=PRT6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L5BAR9 | E3 ubiquitin-protein ligase OS=Apium graveolens OX=4045 GN=AG4045_025476 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 27.294186 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 23.459476 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 23.49688 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.399715 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 26.309444 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 23.915327 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 26.831135 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 24.923069 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 37.789562 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 32.860683 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 40.462692 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 38.249947 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 38.776382 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 28.71768 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.218344 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.251405 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.201217 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 23.079945 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.156691 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.918943 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 26.76856 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.619043 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.135042 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.124187 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.620733 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 23.987034 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.658472 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.083138 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.56048 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.589083 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.410779 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.21242 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 20.393257 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.156886 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.991406 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.645672 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.604513 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.258694 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.129139 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 15.281294 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 12.546442 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.460938 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 23.433546 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 32.725704 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 33.445271 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.190308 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 31.241369 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.283115 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.192499 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.714863 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg32551, jg32552 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15473 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037944 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g205650 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg51062, Sbi_jg51063, Sbi_jg60136 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24314 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00015831, GOSA_00015832 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl78415, Sgl80918, Sgl80924 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000017294, gene:ENSEOMG00000039439 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.9AG0004040, CQ.Regalona.r1.9BG0018160 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30270610 |
| Apiaceae | Apium graveolens | 1 | AgUnG01069 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G015980, COCNU_16G007970 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703591, gene-LOC103721993, gene-LOC120109804 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.194.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G10760, Ftri15G27234 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G02310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012411m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g40140.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g057730.2N, BniB04g005100.2N, BniB08g000620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1156 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1186 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g17950, gene.Cymno05g19270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0255s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g34130, gene.Thate01g34140, gene.Thate01g34150 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1232 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002310, Pov_00002312, Pov_00003358 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10666, Lb2G10667 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.671, BH02.674, CH02.772 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0009690, gene-QOZ80_1BG0058290 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0230290.2, HORVU.MOREX.r3.3HG0230560.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030129, gene-QYE76_048573 |
| Poaceae | Oryza coarctata | 2 | Oco01G001910, Oco02G001900 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g05500.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G065000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205838 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G023500, Chr03G004310, Chr05G014380, Chr08G000830 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G132200, Tel3E01G133400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG008510, gene_TRIDC3AG008660 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G072400.2, TraesCS3A02G073400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb124390_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13023 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7602 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.297, evm.TU.LG26.748 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g39430 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.749 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4435 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9887 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9480 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.1093 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006026 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12705 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5968, nbisL1-mrna-5969 |
| Salicaceae | Populus euphratica | 1 | populus_peu11296 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607049, gene-LOC132630356 |
| Solanaceae | Solanum chilense | 2 | SOLCI002180800, SOLCI002988400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002081, gene-LOC107031080 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_5654, gene_6817, gene_6818 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0466 |
| Zosteraceae | Zostera marina | 1 | Zosma01g25280.v3.1 |