halophFGD

Basic Information

Locus ID: AgUnG01065

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Transcription initiation factor TFIID subunit

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg5783	148478	152517	-	AgUnG01065

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.83	18,190.32 Da	53.10	85.43	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd08047	TAF7	2	145	6.47928E-45	IPR006751
Pfam	PF04658	TAFII55 protein conserved region	1	138	4.8E-32	IPR006751
SMART	SM01370	TAFII55_N_2	1	145	7.1E-60	IPR006751

Gene Ontology

Biological Process:

GO:0006367 (transcription initiation at RNA polymerase II promoter)

Cellular Component:

GO:0005669 (transcription factor TFIID complex)

KEGG Pathway

KO Term:

K03132 (transcription initiation factor TFIID subunit 7)

Pathway:

ko03022 (Basal transcription factors) map03022 (Basal transcription factors)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G55300.2	TBP-associated factor 7.
RefSeq	XP_017237956.1	PREDICTED: transcription initiation factor TFIID subunit 7 [Daucus carota subsp. sativus]
Swiss-Prot	B9DG24	Transcription initiation factor TFIID subunit 7 OS=Arabidopsis thaliana OX=3702 GN=TAF7 PE=1 SV=1
TrEMBL	A0A6L5B8E9	TAFII55_N domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_030625 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	21.232651	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	21.677221	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	20.271402	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	20.086075	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	18.460955	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	26.314877	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	21.495598	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	23.509365	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	24.06999	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	25.276562	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	30.336576	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	25.178373	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	24.505339	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	23.001358	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	14.361831	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	11.663012	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	16.70326	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	13.412999	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	14.250848	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	14.433767	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	14.099482	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	22.623373	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	26.523651	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	21.85684	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	23.927376	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	11.33031	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	12.986576	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	15.197739	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.488932	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	33.002602		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	27.174696		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	27.519686		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	50.859802		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	37.511318		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	48.835861		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	33.421429		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	28.611679		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	32.560757		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	9.879889	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	8.911552	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	10.443974	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	25.441011	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	19.85046	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	26.70068	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	26.466965	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	30.058584	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	22.24892	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	39.849144	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	40.248669	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	40.403194	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg36150
Aizoaceae	Mesembryanthemum crystallinum	1	gene_16797
Amaranthaceae	Atriplex hortensis	1	Ah021273
Amaranthaceae	Beta vulgaris	1	BVRB_4g078640
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg28720, Sbi_jg28725, Sbi_jg2910, Sbi_jg2921, Sbi_jg2930
Amaranthaceae	Salicornia europaea	2	Seu_jg6835, Seu_jg6953
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005813
Amaranthaceae	Suaeda glauca	2	Sgl71171, Sgl74753
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000014721, gene:ENSEOMG00000030480 ... gene:ENSEOMG00000042555
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0019060, CQ.Regalona.r1.3BG0019670
Anacardiaceae	Pistacia vera	2	pistato.v30050350, pistato.v30086030
Apiaceae	Apium graveolens	2	Ag10G02417, AgUnG01065
Arecaceae	Cocos nucifera	1	COCNU_06G011280
Arecaceae	Phoenix dactylifera	2	gene-LOC103716825, gene-LOC103721202
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.700.V1.1
Asteraceae	Flaveria trinervia	2	Ftri11G09674, Ftri12G12246
Brassicaceae	Arabidopsis thaliana	1	AT1G55300.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10011786m.g.v1.0, Thhalv10012232m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g40960.v2.2
Brassicaceae	Brassica nigra	2	BniB04g054300.2N, BniB06g026130.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G2349
Casuarinaceae	Casuarina glauca	1	Cgl05G2506
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g04050
Dunaliellaceae	Dunaliella salina	1	Dusal.0383s00020.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g00070
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG09.402
Plantaginaceae	Plantago ovata	3	Pov_00009317, Pov_00009322, Pov_00020498
Plumbaginaceae	Limonium bicolor	1	Lb7G33210
Poaceae	Echinochloa crus-galli	3	AH02.2528, BH02.2629, CH02.2862
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_1AG0026590, gene-QOZ80_1BG0076880
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0275900.1, HORVU.MOREX.r3.7HG0732830.1
Poaceae	Lolium multiflorum	2	gene-QYE76_054204, gene-QYE76_054248
Poaceae	Oryza coarctata	4	Oco01G015830, Oco02G016140, Oco09G007050, Oco10G007180
Poaceae	Oryza sativa	2	LOC_Os01g46020.1, LOC_Os05g28010.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G212000, gene-BS78_08G101300
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0604951
Poaceae	Sporobolus alterniflorus	3	Chr03G012560, Chr05G019570, Chr08G012840
Poaceae	Thinopyrum elongatum	2	Tel3E01G397500, Tel7E01G764000
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG035030, gene_TRIDC3BG039370 ... gene_TRIDC7AG062840, gene_TRIDC7BG056430
Poaceae	Triticum aestivum	7	TraesCS3A02G233900.1, TraesCS3A02G234400.3 ... TraesCS3B02G265400.2, TraesCS3D02G234800.2, TraesCS7A02G453200.3, TraesCS7B02G353900.3, TraesCS7D02G442600.2
Poaceae	Zea mays	5	Zm00001eb059570_P001, Zm00001eb068820_P001 ... Zm00001eb211560_P001, Zm00001eb233380_P002, Zm00001eb395740_P001
Poaceae	Zoysia japonica	1	nbis-gene-25911
Poaceae	Zoysia macrostachya	1	Zma_g10759
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g08750
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_9_RagTag.211
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-21914
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-18406
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-7502
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000003l.137
Rhizophoraceae	Kandelia obovata	1	Maker00017636
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-6765
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-12551
Salicaceae	Populus euphratica	2	populus_peu04448, populus_peu35266
Solanaceae	Lycium barbarum	1	gene-LOC132627651
Solanaceae	Solanum pennellii	1	gene-LOC114076925
Tamaricaceae	Reaumuria soongarica	1	gene_5512
Zosteraceae	Zostera marina	1	Zosma03g15250.v3.1