halophFGD

Basic Information

Locus ID: AgUnG01056

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Pre-mRNA-splicing factor CWC22 homolog

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg577	44484	58261	-	AgUnG01056

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.46	113,252.73 Da	46.66	94.65	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd13136	MATE_DinF_like	602	999	2.4313E-95	IPR044644
Pfam	PF02854	MIF4G domain	255	436	1.0E-11	IPR003890
Pfam	PF01554	MatE	609	770	2.1E-11	IPR002528
SUPERFAMILY	SSF48371	ARM repeat	244	485	1.44E-67	IPR016024
Gene3D	G3DSA:1.25.40.180	-	212	497	1.7E-97	IPR016021
SMART	SM00543	if4_15	254	437	8.8E-37	IPR003890
TIGRFAM	TIGR00797	matE: MATE efflux family protein	609	882	1.4E-49	IPR002528
MobiDBLite	mobidb-lite	consensus disorder prediction	1	190	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	501	529	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	192	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	496	534	-	-

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport)

Molecular Function:

GO:0003723 (RNA binding) GO:0005515 (protein binding) GO:0015297 (antiporter activity) GO:0042910 (xenobiotic transmembrane transporter activity)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K13100 (pre-mRNA-splicing factor CWC22)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G80930.1	MIF4G domain-containing protein / MA3 domain-containing protein.
RefSeq	XP_017237155.1	PREDICTED: protein DETOXIFICATION 45, chloroplastic-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9SVE7	Protein DETOXIFICATION 45, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DTX45 PE=2 SV=2
TrEMBL	A0A6L5B8F8	Protein DETOXIFICATION OS=Apium graveolens OX=4045 GN=AG4045_004560 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	26.418724	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	18.733053	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	19.705538	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	19.235418	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	22.028427	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	20.04454	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	18.639273	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	19.282412	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	26.155954	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	27.238432	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	29.367954	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	29.413065	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	29.509432	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	26.826103	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.279987	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	12.312988	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	7.130404	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.727663	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	11.840537	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	16.264618	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	18.02552	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	9.294682	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	10.989383	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	8.947351	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	9.696609	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	20.890139	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.545782	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	15.001361	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	21.290154	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.760758		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.206463		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.736886		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.626211		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.700688		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	11.136722		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.301365		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.450431		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.271797		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	17.511087	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	18.891323	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	19.322216	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	21.318247	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	16.016962	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	20.521976	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	14.154109	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	16.853376	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	13.54401	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	10.006528	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.390736	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	6.429299	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg16292, jg1703
Aizoaceae	Mesembryanthemum crystallinum	1	gene_23440
Amaranthaceae	Atriplex hortensis	1	Ah010036
Amaranthaceae	Beta vulgaris	1	BVRB_7g175420
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg4516, Sbi_jg49414, Sbi_jg8544
Amaranthaceae	Salicornia europaea	1	Seu_jg5930
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00006241, GOSA_00006242, GOSA_00006243, GOSA_00012777
Amaranthaceae	Suaeda glauca	2	Sgl02555, Sgl07710
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000005395, gene:ENSEOMG00000033023 ... gene:ENSEOMG00000033114, gene:ENSEOMG00000036835, gene:ENSEOMG00000042154
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.7AG0001500, CQ.Regalona.r1.8AG0002580 ... CQ.Regalona.r1.9BG0004200
Anacardiaceae	Pistacia vera	1	pistato.v30114300
Apiaceae	Apium graveolens	7	Ag10G01920, Ag1G00323, Ag2G00835, Ag2G01864, Ag4G01927 ... Ag8G01976, AgUnG01056
Arecaceae	Cocos nucifera	3	COCNU_04G007010, COCNU_04G007020, COCNU_12G004610
Arecaceae	Phoenix dactylifera	2	gene-LOC103706269, gene-LOC103706325
Asparagaceae	Asparagus officinalis	1	AsparagusV1_Unassigned.177.V1.1
Asteraceae	Flaveria trinervia	3	Ftri17G21150, Ftri8G09622, Ftri9G19813
Brassicaceae	Arabidopsis thaliana	2	AT1G52325.1, AT1G80930.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10018086m.g.v1.0, Thhalv10020518m.g.v1.0 ... Thhalv10023142m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g07760.v2.2, Sp5g34810.v2.2, Sp6g06350.v2.2
Brassicaceae	Brassica nigra	5	BniB01g055180.2N, BniB01g055370.2N, BniB03g023340.2N ... BniB05g075210.2N, BniB06g051140.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G2108, Ceq02G2562, Ceq05G1995
Casuarinaceae	Casuarina glauca	2	Cgl01G2307, Cgl02G2645
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g11540
Dunaliellaceae	Dunaliella salina	2	Dusal.0363s00002.v1.0, Dusal.0363s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g04180
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-4350, nbisL1-mrna-5368
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG08.137
Plantaginaceae	Plantago ovata	5	Pov_00006619, Pov_00015059, Pov_00021791, Pov_00021792 ... Pov_00032595
Plumbaginaceae	Limonium bicolor	1	Lb3G21271
Poaceae	Echinochloa crus-galli	8	AH01.5045, AH02.1157, AH05.543, AH09.358, BH05.594, CH05.680 ... CH03.2116, CH03.2122
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_3AG0209210, gene-QOZ80_3AG0224900 ... gene-QOZ80_3BG0254350, gene-QOZ80_3BG0270160, gene-QOZ80_4AG0325360
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0104130.1.CDS1 ... HORVU.MOREX.r3.2HG0104140.1.CDS1, HORVU.MOREX.r3.2HG0104160.1.CDS1, HORVU.MOREX.r3.3HG0312600.1
Poaceae	Lolium multiflorum	7	gene-QYE76_005583, gene-QYE76_038330, gene-QYE76_038331 ... gene-QYE76_038332, gene-QYE76_038333, gene-QYE76_038334, gene-QYE76_069802
Poaceae	Oryza coarctata	6	Oco01G010170, Oco21G001220, Oco23G004490, Oco23G004720 ... Oco24G003960, Oco24G003970
Poaceae	Oryza sativa	3	LOC_Os11g05394.1, LOC_Os12g15420.1, LOC_Os12g17550.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G138900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0704871, Pt_Chr0704872
Poaceae	Sporobolus alterniflorus	3	Chr04G032180, Chr07G031230, Chr12G032380
Poaceae	Thinopyrum elongatum	1	Tel3E01G704300
Poaceae	Triticum dicoccoides	3	gene_TRIDC2BG009050, gene_TRIDC3AG063170 ... gene_TRIDC3BG070870
Poaceae	Triticum aestivum	6	TraesCS2D02G069200.1.cds1, TraesCS3A02G446300.1 ... TraesCS3B02G481400.1, TraesCS3D02G438900.1, TraesCS5A02G212200.1.cds1, TraesCS5B02G211500.1.cds1
Poaceae	Zea mays	1	Zm00001eb410000_P001
Poaceae	Zoysia japonica	4	nbis-gene-15599, nbis-gene-15600, nbis-gene-16695 ... nbis-gene-57195
Poaceae	Zoysia macrostachya	1	Zma_g2416
Portulacaceae	Portulaca oleracea	2	evm.TU.LG10.431, evm.TU.LG17.428
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g26790
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_6_RagTag.351, evm.TU.Scaffold_6_RagTag.354 ... evm.TU.Scaffold_6_RagTag.383
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-15246, nbisL1-mrna-16008, nbisL1-mrna-16107
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-8830, nbisL1-mrna-8831, nbisL1-mrna-9230
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-314
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000011l.87, evm.TU.utg000011l.209
Rhizophoraceae	Kandelia obovata	1	Maker00007842
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-11745
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-17238, nbisL1-mrna-17254, nbisL1-mrna-17256 ... nbisL1-mrna-17258, nbisL1-mrna-17260, nbisL1-mrna-17263, nbisL1-mrna-17265
Salicaceae	Populus euphratica	1	populus_peu25410
Solanaceae	Lycium barbarum	2	gene-LOC132620462, gene-LOC132625795
Solanaceae	Solanum chilense	3	SOLCI001687100, SOLCI006502300, SOLCI006560000
Solanaceae	Solanum pennellii	4	gene-LOC107013725, gene-LOC107014972, gene-LOC107018086 ... gene-LOC107028488
Tamaricaceae	Reaumuria soongarica	1	STRG.28673_chr04_+
Tamaricaceae	Tamarix chinensis	1	TC02G3732
Zosteraceae	Zostera marina	2	Zosma01g39300.v3.1, Zosma04g06740.v3.1