halophFGD

Basic Information

Locus ID: AgUnG00997

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the peptidase C19 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg5499	12845	26851	+	AgUnG00997

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.18	95,670.85 Da	43.56	78.54	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00443	Ubiquitin carboxyl-terminal hydrolase	278	849	4.1E-73	IPR001394
SUPERFAMILY	SSF54001	Cysteine proteinases	276	849	3.34E-96	IPR038765
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	266	558	1.2E-66	-
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	669	849	4.8E-43	-
ProSiteProfiles	PS50235	Ubiquitin specific protease (USP) domain profile.	278	849	49.788025	IPR028889
ProSitePatterns	PS00972	Ubiquitin specific protease (USP) domain signature 1.	279	294	-	IPR018200
ProSitePatterns	PS00973	Ubiquitin specific protease (USP) domain signature 2.	817	834	-	IPR018200

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process) GO:0016579 (protein deubiquitination)

Molecular Function:

GO:0004843 (cysteine-type deubiquitinase activity)

KEGG Pathway

KO Term:

K21343 (ubiquitin carboxyl-terminal hydrolase 15 [EC:3.4.19.12])

Pathway:

ko04137 (Mitophagy - animal) map04137 (Mitophagy - animal)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G22030.1	ubiquitin-specific protease 8.
RefSeq	XP_017236117.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9C585	Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2
TrEMBL	A0A6L5B8F1	Ubiquitin carboxyl-terminal hydrolase OS=Apium graveolens OX=4045 GN=AG4045_022181 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.700593	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.2078	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.892793	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.899233	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.653678	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.849437	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.725198	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.968026	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.246171	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.549268	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.775433	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.813235	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.016528	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.824182	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.776354	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.773934	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.172501	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.018027	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.901599	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.049016	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.581197	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.665558	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.972284	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.065914	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.883485	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.083506	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.205978	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.077632	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.760282	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.335376		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.317104		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.435097		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.526622		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.173247		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.318707		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.209969		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.215019		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.218184		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.178432	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.383103	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.790872	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.2413	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.645747	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.625275	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.546677	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.41426	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.658489	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.085705	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	4.235353	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	2.806094	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg15180, jg16749, jg22501, jg36058, jg37396, jg8098
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14623, gene_15266, gene_6869, gene_692
Amaranthaceae	Atriplex hortensis	3	Ah004001, Ah016422, Ah027748
Amaranthaceae	Beta vulgaris	4	BVRB_1g013070, BVRB_5g104230, BVRB_5g108750, BVRB_7g171320
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg1453, Sbi_jg15770, Sbi_jg15771, Sbi_jg24154 ... Sbi_jg35107, Sbi_jg40688, Sbi_jg50692, Sbi_jg7995
Amaranthaceae	Salicornia europaea	4	Seu_jg12044, Seu_jg13783, Seu_jg2252, Seu_jg3283
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003451, GOSA_00010746, GOSA_00026351
Amaranthaceae	Suaeda glauca	8	Sgl44166, Sgl48935, Sgl51333, Sgl52363, Sgl56578, Sgl57655 ... Sgl72711, Sgl76250
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000005045, gene:ENSEOMG00000005973 ... gene:ENSEOMG00000007359, gene:ENSEOMG00000011887, gene:ENSEOMG00000022340, gene:ENSEOMG00000023048, gene:ENSEOMG00000023227, gene:ENSEOMG00000023536, gene:ENSEOMG00000024167, gene:ENSEOMG00000034902, gene:ENSEOMG00000036939, gene:ENSEOMG00000039874, gene:ENSEOMG00000047171
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.5AG0011380, CQ.Regalona.r1.5BG0005110 ... CQ.Regalona.r1.5BG0011820, CQ.Regalona.r1.7AG0005280, CQ.Regalona.r1.8AG0012430, CQ.Regalona.r1.9BG0000540
Anacardiaceae	Pistacia vera	4	pistato.v30055480, pistato.v30074910, pistato.v30133200 ... pistato.v30276840
Apiaceae	Apium graveolens	7	Ag11G04399, Ag1G00062, Ag2G01212, Ag2G01608, Ag3G00677 ... Ag6G02210, AgUnG00997
Arecaceae	Cocos nucifera	4	COCNU_03G000200, COCNU_10G009170, COCNU_15G004400 ... scaffold007358G000010
Arecaceae	Phoenix dactylifera	6	gene-LOC103707607, gene-LOC103710820, gene-LOC103714421 ... gene-LOC103714957, gene-LOC103722919, gene-LOC120103833
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.433.V1.1, AsparagusV1_05.1652.V1.1 ... AsparagusV1_10.135.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G20462, Ftri13G16792, Ftri15G02660, Ftri16G01695 ... Ftri2G16266, Ftri6G05228
Brassicaceae	Arabidopsis thaliana	5	AT1G32850.1, AT2G40930.1, AT4G10570.1, AT4G10590.2 ... AT5G22030.2
Brassicaceae	Eutrema salsugineum	5	Thhalv10006750m.g.v1.0, Thhalv10012650m.g.v1.0 ... Thhalv10016401m.g.v1.0, Thhalv10027354m.g.v1.0, Thhalv10028406m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g28150.v2.2, Sp4g23240.v2.2, Sp6g06860.v2.2 ... Sp6g23160.v2.2
Brassicaceae	Brassica nigra	9	BniB01g004480.2N, BniB01g008660.2N, BniB02g041530.2N ... BniB03g035870.2N, BniB04g049530.2N, BniB05g058320.2N, BniB08g010970.2N, BniB08g035970.2N, BniB08g052090.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G0661, Ceq04G0858, Ceq04G1239, Ceq05G1541
Casuarinaceae	Casuarina glauca	8	Cgl03G0751, Cgl04G0962, Cgl04G0963, Cgl04G0964, Cgl04G0965 ... Cgl04G0974, Cgl04G1402, Cgl05G1543
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g00060, gene.Cymno08g02970, gene.Cymno10g04770
Dunaliellaceae	Dunaliella salina	1	Dusal.0299s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g29410, gene.Thate04g05110, gene.Thate04g21560
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.1884, evm.TU.LG01.2662, evm.TU.LG09.547 ... evm.TU.LG10.1627
Plantaginaceae	Plantago ovata	4	Pov_00003074, Pov_00003619, Pov_00025505, Pov_00026576
Plumbaginaceae	Limonium bicolor	10	Lb1G02466, Lb2G10344, Lb2G13622, Lb2G15163, Lb3G20268 ... Lb4G23140, Lb5G28584, Lb5G28851, Lb5G28853, Lb6G29807
Poaceae	Echinochloa crus-galli	12	AH01.2506, AH03.279, AH04.1234, AH05.4108, BH01.2837 ... BH03.357, BH04.1208, BH05.4206, CH01.3043, CH03.429, CH04.1384, CH05.4432
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0120360, gene-QOZ80_2BG0174840 ... gene-QOZ80_2BG0174850, gene-QOZ80_5AG0398500, gene-QOZ80_5BG0447120, gene-QOZ80_7AG0556150, gene-QOZ80_7BG0587090, gene-QOZ80_9AG0680900, gene-QOZ80_9BG0707130, gene-QOZ80_UnG0728540
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0035690.2, HORVU.MOREX.r3.2HG0152430.1 ... HORVU.MOREX.r3.4HG0365930.1, HORVU.MOREX.r3.5HG0425920.1
Poaceae	Lolium multiflorum	6	gene-QYE76_001172, gene-QYE76_008273, gene-QYE76_010796 ... gene-QYE76_010860, gene-QYE76_042572, gene-QYE76_067043
Poaceae	Oryza coarctata	8	Oco13G001710, Oco14G001850, Oco19G001010, Oco20G001150 ... Oco21G005460, Oco22G006480, Oco23G010770, Oco24G010570
Poaceae	Oryza sativa	7	LOC_Os01g48600.1, LOC_Os07g06610.1, LOC_Os09g17480.1 ... LOC_Os10g07270.1, LOC_Os11g28360.1, LOC_Os11g28365.1, LOC_Os12g42600.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G039200, gene-BS78_05G127000, gene-BS78_K096800 ... gene-BS78_08G153700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0303555, Pt_Chr0303561, Pt_Chr0501276, Pt_Chr0704572 ... Pt_Chr0704933
Poaceae	Sporobolus alterniflorus	10	Chr06G020260, Chr07G017790, Chr09G006910, Chr0G004600 ... Chr13G017510, Chr13G017540, Chr19G007370, Chr19G017700, Chr27G009360, Chr31G004590
Poaceae	Thinopyrum elongatum	4	Tel1E01G240800, Tel2E01G460100, Tel4E01G276700 ... Tel5E01G066200
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG020490, gene_TRIDC1BG024290 ... gene_TRIDC2AG033710, gene_TRIDC2BG038310, gene_TRIDC4AG019950, gene_TRIDC4BG023930, gene_TRIDC5AG004000, gene_TRIDC5BG004140
Poaceae	Triticum aestivum	12	TraesCS1A02G137800.3, TraesCS1B02G149400.2 ... TraesCS1D02G132600.2, TraesCS2A02G248500.1, TraesCS2B02G268700.1, TraesCS2D02G250200.1, TraesCS4A02G139900.1, TraesCS4B02G148000.4, TraesCS4D02G153200.3, TraesCS5A02G027000.1, TraesCS5B02G026200.1, TraesCS5D02G034700.1
Poaceae	Zea mays	4	Zm00001eb026810_P002, Zm00001eb090590_P003 ... Zm00001eb134530_P002, Zm00001eb300350_P001
Poaceae	Zoysia japonica	3	nbis-gene-35742, nbis-gene-42352, nbis-gene-44472
Poaceae	Zoysia macrostachya	4	Zma_g15860, Zma_g17881, Zma_g25364, Zma_g4759
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.870, evm.TU.LG04.2760, evm.TU.LG04.3200 ... evm.TU.LG08.423, evm.TU.LG16.404, evm.TU.LG19.1110, evm.TU.LG23.144, evm.TU.LG24.1111
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g00190, gene.Posoc05g04310, gene.Posoc06g08640
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_13_RagTag.560, evm.TU.Scaffold_16_RagTag.22 ... evm.TU.Scaffold_1_RagTag.1317, evm.TU.Scaffold_2_RagTag.1072, evm.TU.Scaffold_2_RagTag.1073, evm.TU.Scaffold_8_RagTag.213
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-10111, nbisL1-mrna-10113, nbisL1-mrna-22236 ... nbisL1-mrna-22269, nbisL1-mrna-30510, nbisL1-mrna-4114
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-11243, nbisL1-mrna-13319, nbisL1-mrna-17327 ... nbisL1-mrna-18149, nbisL1-mrna-19322
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10174, nbisL1-mrna-15946, nbisL1-mrna-17840 ... nbisL1-mrna-20455, nbisL1-mrna-4126
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000009l.604, evm.TU.utg000015l.297 ... evm.TU.utg000016l.389, evm.TU.utg000018l.857, evm.TU.utg000022l.483
Rhizophoraceae	Kandelia obovata	3	Maker00003014, Maker00015233, Maker00017169
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-12514, nbisL1-mrna-3149, nbisL1-mrna-3626 ... nbisL1-mrna-4215, nbisL1-mrna-7559, nbisL1-mrna-7560
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-11389, nbisL1-mrna-13494, nbisL1-mrna-15234 ... nbisL1-mrna-5682, nbisL1-mrna-6822
Salicaceae	Populus euphratica	7	populus_peu00224, populus_peu02478, populus_peu10782 ... populus_peu12390, populus_peu17229, populus_peu25987, populus_peu26318
Solanaceae	Lycium barbarum	4	gene-LOC132603622, gene-LOC132603822, gene-LOC132631635 ... gene-LOC132634695
Solanaceae	Solanum chilense	3	SOLCI000958500, SOLCI001556500, SOLCI003648000
Solanaceae	Solanum pennellii	3	gene-LOC107023873, gene-LOC107027916, gene-LOC107031377
Tamaricaceae	Reaumuria soongarica	5	gene_11654, gene_13537, gene_15447, gene_15448, gene_3657
Tamaricaceae	Tamarix chinensis	5	TC01G4483, TC06G0156, TC06G1181, TC09G0663, TC11G1297
Zosteraceae	Zostera marina	3	Zosma03g27640.v3.1, Zosma04g00580.v3.1, Zosma04g01490.v3.1