Basic Information
Locus ID:
AgUnG00987
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
G-quadruplex DNA unwinding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg5383 | 96438 | 99612 | + | AgUnG00987 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 40,778.57 Da | 33.58 | 96.10 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04480 | RPA1_DBD_A_like | 29 | 116 | 9.09517E-16 | - |
| Pfam | PF02721 | Domain of unknown function DUF223 | 53 | 138 | 6.5E-8 | IPR003871 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 21 | 123 | 2.96E-15 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 124 | 292 | 1.4E-19 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 16 | 121 | 2.0E-15 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017256448.1 | PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5B8X4 | DUF223 domain-containing protein (Fragment) OS=Apium graveolens OX=4045 GN=AG4045_005644 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 35 | Ag10G00978, Ag10G02928, Ag11G04457, Ag11G04458, Ag11G04459 ... |