Basic Information
Locus ID:
AgUnG00945
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg5133 | 71117 | 74674 | - | AgUnG00945 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 46,103.21 Da | 42.16 | 95.19 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 118 | 414 | 8.05191E-96 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 122 | 367 | 6.5E-74 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 95 | 414 | 6.4E-87 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 91 | 415 | 6.7E-99 | IPR008949 |
| TIGRFAM | TIGR02749 | prenyl_cyano: solanesyl diphosphate synthase | 92 | 415 | 6.8E-162 | - |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 178 | 192 | - | IPR033749 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 300 | 312 | - | IPR033749 |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 126 | 414 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Reaction:
R07267 (all-trans-Octaprenyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + all-trans-Nonaprenyl diphosphate)
R09250 (Geranyl diphosphate + 7 Isopentenyl diphosphate <=> all-trans-Nonaprenyl diphosphate + 7 Diphosphate)
R09251 (Geranylgeranyl diphosphate + 5 Isopentenyl diphosphate <=> all-trans-Nonaprenyl diphosphate + 5 Diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17050.1 | solanesyl diphosphate synthase 2. Encodes a protein with solanesyl diphosphate synthase activity. | 0 |
| RefSeq | XP_017254199.1 | PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q76FS5 | Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SPS2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L5BBM6 | Solanesyl-diphosphate synthase 3, chloroplastic OS=Apium graveolens OX=4045 GN=AG4045_003476 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.724344 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.416279 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.193029 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 16.398727 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.869068 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.619282 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.869678 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.560002 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 42.276924 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 45.859814 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 47.29475 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 34.419384 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 42.706676 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 37.74268 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 24.41571 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.681986 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 33.782082 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 39.632755 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 47.187935 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 38.167179 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 44.428242 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 17.8517 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 19.435251 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 20.6838 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.314188 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 55.271698 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 38.209862 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 60.104309 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 44.439419 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 226.475113 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 250.540726 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 236.56897 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 84.516548 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 46.551807 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 75.76255 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 105.722221 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 194.656296 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 168.673523 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 55.362083 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 127.798805 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 272.250458 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 74.439049 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 26.012419 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.881088 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.270624 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 65.832802 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.82649 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.185452 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.420448 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 22.483387 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19175, jg21212, jg24302 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12618 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007484 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g164490 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19056, Sbi_jg37485 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5329 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009985 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl22187, Sgl27453 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009800, gene:ENSEOMG00000028567 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0016840, CQ.Regalona.r1.4BG0017210 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30120080, pistato.v30163410 |
| Apiaceae | Apium graveolens | 2 | Ag2G02267, AgUnG00945 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G006900, COCNU_14G004540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712684 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.807.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G08551 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G17050.1, AT1G78510.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007715m.g.v1.0, Thhalv10018616m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g15170.v2.2, Sp5g33600.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g027250.2N, BniB03g058080.2N, BniB06g042450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0831 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0952, Cgl01G0954 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g08670 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0279s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00450 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1357 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009516 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G36737 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.1241, BH05.1423, BH05.3245, CH05.1592, CH05.3321 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0361770, gene-QOZ80_5AG0387150 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0092200.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015231 |
| Poaceae | Oryza coarctata | 4 | Oco09G017810, Oco10G017690, Oco23G004700, Oco24G004200 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g50550.1, LOC_Os12g17320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G250100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0506011, Pt_Chr0506035 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G020510, Chr06G021920, Chr0G005360, Chr19G014310 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G698000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG061930, gene_TRIDC1BG071020 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G420900.2, TraesCS1B02G452100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb004050_P006, Zm00001eb297120_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-12401, nbis-gene-24745, nbis-gene-34578 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g24969, Zma_g25695, Zma_g28884 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1129 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g03290 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.150 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11121 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1559 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10639 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.95 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013725 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9117 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15340 |
| Salicaceae | Populus euphratica | 2 | populus_peu00699, populus_peu17756 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617245 |
| Solanaceae | Solanum chilense | 1 | SOLCI000986500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026209 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7765 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0002 |
| Zosteraceae | Zostera marina | 2 | Zosma01g06520.v3.1, Zosma03g01470.v3.1 |