Basic Information
Locus ID:
AgUnG00879
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
UBC22
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg4841 | 20067 | 26714 | - | AgUnG00879 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 29,279.06 Da | 31.16 | 80.48 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 12 | 152 | 1.11316E-55 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 15 | 150 | 3.2E-36 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 158 | 1.42E-47 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 154 | 9.4E-47 | IPR016135 |
| SMART | SM00212 | ubc_7 | 13 | 157 | 8.9E-49 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 10 | 157 | 42.846832 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 83 | 99 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 273 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05080.1 | ubiquitin-conjugating enzyme 22. | 0 |
| RefSeq | XP_017248160.1 | PREDICTED: ubiquitin-conjugating enzyme E2 22-like [Daucus carota subsp. sativus] | 0 |
| Q9FF66 | Ubiquitin-conjugating enzyme E2 22 OS=Arabidopsis thaliana OX=3702 GN=UBC22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6L5B8S6 | UBC core domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_025369 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 47.169659 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 44.089375 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 46.085476 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 47.25491 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 38.946068 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 37.561531 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 29.947422 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 35.612907 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 98.523232 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 91.797234 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 88.44487 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 81.387611 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 85.055107 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 82.660667 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 141.112549 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 143.585114 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 120.582108 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 78.279549 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 113.001045 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 113.729843 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 86.512817 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 116.859978 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 123.723572 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 127.813072 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 120.799934 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 50.466801 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 73.679749 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 57.924141 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 72.174149 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 18.994432 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 21.015713 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 18.425783 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 36.264118 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 49.458649 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 56.325642 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 30.183809 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 30.816093 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 40.446686 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 38.173412 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 24.223738 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 20.206953 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 81.367165 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 78.563988 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 72.586548 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 71.989922 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 77.280899 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 112.535255 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 153.011307 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 106.671898 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 92.716339 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15770, jg4164 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19137 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah022323, Ah030887 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g064240, BVRB_5g120780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4371, Sbi_jg49453 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5789 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000328, GOSA_00012896 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02407, Sgl07557, Sgl11227, Sgl16622 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012726, gene:ENSEOMG00000029980 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0023950, CQ.Regalona.r1.3BG0024860 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30201160 |
| Apiaceae | Apium graveolens | 3 | Ag10G02178, Ag2G01567, AgUnG00879 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G007940, COCNU_11G009750, COCNU_11G013250 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701486, gene-LOC103707041, gene-LOC120103744 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.634.V1.1, AsparagusV1_05.2393.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G22280, Ftri6G02225 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014464m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37750.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g055580.2N, BniB08g002030.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1465 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1498 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g17870, gene.Cymno04g12240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0019s00029.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g10250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8757 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1577 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000106 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G16835, Lb7G33712 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2548, AH06.2549, BH06.2352, BH06.2353, CH06.2570 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0547160, gene-QOZ80_6AG0547170 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.6HG0570430.1, HORVU.MOREX.r3.7HG0739540.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_020863, gene-QYE76_020904, gene-QYE76_036431 |
| Poaceae | Oryza coarctata | 2 | Oco11G014470, Oco12G014620 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g45000.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G216100, gene-BS78_10G216200 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0202368, Pt_Chr0401393, Pt_Chr0401394, Pt_Chr0401410 ... |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G031400, Chr05G009160, Chr05G009170, Chr10G019600 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G314900, Tel7E01G833700 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC6AG021410, gene_TRIDC6BG027180 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS6A02G153500.1, TraesCS6B02G181200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb274710_P001, Zm00001eb389230_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40476, nbis-gene-9837 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30942, Zma_g33199 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2043, evm.TU.LG15.1097 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g28430, gene.Posoc02g06640 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1563, evm.TU.Scaffold_8_RagTag.245 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10069, nbisL1-mrna-19909 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19373, nbisL1-mrna-8521 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-13495, nbisL1-mrna-13496, nbisL1-mrna-17872 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.138, evm.TU.utg000018l.834 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002876, Maker00011823 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13167, nbisL1-mrna-3172 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11360, nbisL1-mrna-12253 |
| Salicaceae | Populus euphratica | 2 | populus_peu10740, populus_peu26374 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607308 |
| Solanaceae | Solanum chilense | 1 | SOLCI000034300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002230 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12388 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G2038 |
| Zosteraceae | Zostera marina | 3 | Zosma01g33440.v3.1, Zosma01g42840.v3.1, Zosma02g15260.v3.1 |