Basic Information
Locus ID:
AgUnG00778
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein SCAI
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg451 | 55246 | 58908 | - | AgUnG00778 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 33,078.40 Da | 38.15 | 86.36 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12070 | Protein SCAI | 128 | 268 | 2.1E-38 | IPR022709 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40050.2 | - | 0 |
| RefSeq | XP_017230059.1 | PREDICTED: protein SCAI [Daucus carota subsp. sativus] | 0 |
| Q8N9R8 | Protein SCAI OS=Homo sapiens OX=9606 GN=SCAI PE=1 SV=2 | 0 | |
| TrEMBL | A0A6L5B9R3 | Disks large-associated protein 5 OS=Apium graveolens OX=4045 GN=AG4045_018173 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.786025 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.467218 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.312932 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.67851 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.853489 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.978497 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.175218 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.395496 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.40221 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.488857 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.807131 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.497375 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.920786 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.645707 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.560727 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.22932 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.214597 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.125181 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.167879 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.353082 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.226777 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.181754 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.225378 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.230598 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.517199 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.094645 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.667838 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.512543 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.350748 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.824067 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg5040, jg5041, jg9698 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_20539, gene_20540 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038480 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g203210, BVRB_9g203220 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg14227, Sbi_jg14653, Sbi_jg53497 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10151 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012551 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017951, gene:ENSEOMG00000039769 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1BG0006910, CQ.Regalona.r1.9AG0001210 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30224700 |
| Apiaceae | Apium graveolens | 4 | Ag1G02139, Ag3G01840, Ag5G01792, AgUnG00778 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G008040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705698 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1659.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G17763, Ftri3G19894 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G07980.1, AT3G13530.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10019902m.g.v1.0, Thhalv10019926m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g06890.v2.2, Sp3g11740.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g051670.2N, BniB01g051690.2N, BniB03g023690.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0627 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G0614, Cgl07G0623 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g09340 |
| Dunaliellaceae | Dunaliella salina | 10 | Dusal.0047s00002.v1.0, Dusal.0049s00031.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g14080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-9393, nbisL1-mrna-9394 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.942 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019389 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G34098, Lb7G34518 |
| Poaceae | Echinochloa crus-galli | 2 | AH09.2589, BH09.2813 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300770, gene-QOZ80_4BG0331480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0202060.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000054, gene-QYE76_046966 |
| Poaceae | Oryza coarctata | 2 | Oco07G018150, Oco08G017530 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G268900 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0300488, Pt_Chr0300508, Pt_Chr0503147 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr23G001840, Chr25G001450, Chr26G017460, Chr30G000320 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G842500, Tel3E01G009200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG070140, gene_TRIDC2BG075830 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G498000.3, TraesCS2B02G526200.3 ... |
| Poaceae | Zea mays | 4 | Zm00001eb067530_P002, Zm00001eb134900_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6089 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20613, Zma_g22143 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.2308, evm.TU.LG08.34, evm.TU.LG13.1460 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g16660, gene.Posoc06g16670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.347 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26619 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-7677, nbisL1-mrna-9553 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17628, nbisL1-mrna-19993 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.211, evm.TU.utg000013l.358 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004377, Maker00004758 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10751, nbisL1-mrna-13991 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14379, nbisL1-mrna-2624 |
| Salicaceae | Populus euphratica | 4 | populus_peu13948, populus_peu13949, populus_peu23151 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632319 |
| Solanaceae | Solanum chilense | 1 | SOLCI002413500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004536 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4344 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1698 |
| Zosteraceae | Zostera marina | 3 | Zosma01g27110.v3.1, Zosma01g27120.v3.1, Zosma05g05310.v3.1 |