Basic Information
Locus ID:
AgUnG00744
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Mitochondrial ubiquitin ligase activator of NFKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg4469 | 53433 | 56397 | + | AgUnG00744 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 42,833.60 Da | 60.03 | 99.48 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12483 | E3 Ubiquitin ligase | 137 | 284 | 8.9E-35 | IPR022170 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 331 | 378 | 5.3E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 332 | 379 | 8.7E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 319 | 384 | 6.6E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 333 | 372 | 0.004 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 333 | 373 | 11.323791 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54150.1 | E3 Ubiquitin ligase family protein. | 0 |
| RefSeq | XP_017254417.1 | PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Daucus carota subsp. sativus] | 0 |
| Q9SYH3 | E3 ubiquitin-protein ligase SPL2 OS=Arabidopsis thaliana OX=3702 GN=SPL2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6L5B9U4 | RING-type E3 ubiquitin transferase OS=Apium graveolens OX=4045 GN=AG4045_001447 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.048695 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.758158 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.068778 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.492791 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.067376 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.951818 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.360708 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.402031 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 10.39719 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.818601 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.385324 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.101017 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.054983 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.362193 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.058542 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.560259 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.498361 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.004666 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.407129 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.647719 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.722841 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.527164 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.455722 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.598068 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.105378 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.010375 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.569454 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.138346 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.713459 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.912847 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.97228 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.158264 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.776213 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.405034 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 18.954628 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.154814 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.470263 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.793798 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.595508 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.092873 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.21882 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.226178 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.247724 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.833787 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.662923 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.583345 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 9.841121 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.436821 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.033814 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.12511 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18009 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6736 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028792 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g170020 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2050, Sbi_jg34462 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2718 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002846 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73476, Sgl76997 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007942, gene:ENSEOMG00000035025 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0006240, CQ.Regalona.r1.9BG0006140 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30118270 |
| Apiaceae | Apium graveolens | 2 | Ag9G01062, AgUnG00744 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G008670 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698953 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1305.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G10847 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G54150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011564m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g40600.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g054710.2N, BniB07g001720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0810 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0820 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g10890, gene.Cymno05g12030 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g07380 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4617 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.142 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009670 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G18640, Lb3G18642, Lb7G33954 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.4793, CH01.5364 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0235800, gene-QOZ80_3BG0292310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0404690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_070353, gene-QYE76_070418 |
| Poaceae | Oryza coarctata | 2 | Oco05G004400, Oco06G004460 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g08000.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G462400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0101347, Pt_Chr0107647 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G035870, Chr04G002920, Chr07G008290, Chr0G008590 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G489500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG001420, gene_TRIDC4BG050270 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G011000.1, TraesCS4B02G293400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb401910_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27105, nbis-gene-4337 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18443, Zma_g4318 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG12.1578, evm.TU.LG19.59, evm.TU.LG24.287 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g25700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.731 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27561 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8927 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8105 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.13 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018891 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7453 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22860 |
| Salicaceae | Populus euphratica | 2 | populus_peu02888, populus_peu33781 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603749 |
| Solanaceae | Solanum chilense | 1 | SOLCI004472900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005454 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30684_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0455 |
| Zosteraceae | Zostera marina | 1 | Zosma02g07290.v3.1 |