Basic Information
Locus ID:
AgUnG00702
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
ZTL
Description:
Adagio protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg4451 | 20408 | 26650 | + | AgUnG00702 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 66,325.97 Da | 46.66 | 90.08 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 35 | 145 | 1.4964E-7 | IPR000014 |
| Pfam | PF07646 | Kelch motif | 517 | 564 | 8.1E-5 | IPR011498 |
| Pfam | PF13426 | PAS domain | 36 | 146 | 5.3E-16 | IPR000014 |
| Pfam | PF13418 | Galactose oxidase, central domain | 293 | 343 | 4.4E-10 | - |
| Pfam | PF00646 | F-box domain | 197 | 241 | 8.5E-5 | IPR001810 |
| Pfam | PF13415 | Galactose oxidase, central domain | 357 | 404 | 7.5E-10 | - |
| Pfam | PF13415 | Galactose oxidase, central domain | 408 | 458 | 1.1E-4 | - |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 280 | 594 | 1.7E-39 | IPR011043 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 35 | 146 | 7.85E-19 | IPR035965 |
| SUPERFAMILY | SSF81383 | F-box domain | 188 | 256 | 3.92E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 192 | 241 | 1.9E-6 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 474 | 605 | 3.1E-17 | IPR015915 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 21 | 157 | 8.6E-48 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 270 | 473 | 1.6E-39 | IPR015915 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 28 | 106 | 11.358851 | IPR000014 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57360.1 | Galactose oxidase/kelch repeat superfamily protein. Encodes clock-associated PAS protein ZTL; Also known as FKF1-like protein 2 or ADAGIO1(ADO1). A protein containing a PAS domain ZTL contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. ZTL is the F-box component of an SCF complex implicated in the degradation of TOC1. | 0 |
| RefSeq | XP_017247242.1 | PREDICTED: adagio protein 1 [Daucus carota subsp. sativus] | 0 |
| Q94BT6 | Adagio protein 1 OS=Arabidopsis thaliana OX=3702 GN=ADO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6L5BAB2 | PAS domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_024178 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 25.856833 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 23.421133 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 22.288895 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 25.479435 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 25.407719 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.773491 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 21.617001 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 21.170202 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.822819 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 26.410994 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.520758 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 28.624073 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 26.821819 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.217133 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.425061 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.640869 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.021253 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.172527 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.918283 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.663383 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.526697 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.124614 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.910734 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.196285 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.104891 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.706989 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.97855 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.956968 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.646587 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.392037 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 16.542742 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.564325 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 16.010792 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.728784 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.48511 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.054184 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.337023 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.82738 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 21.495728 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 19.427673 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.773395 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 24.415325 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.217009 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 42.179661 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 41.466702 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 27.017551 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 31.174776 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.136657 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.880026 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.152231 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg15714, jg31460, jg33156, jg33157, jg4112, jg5124 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10806, gene_3726 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013334, Ah014762 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g154770, BVRB_8g198410 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg25165, Sbi_jg43112, Sbi_jg45707, Sbi_jg9007 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11549, Seu_jg19583 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001926, GOSA_00007636 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl41241, Sgl42442, Sgl47171 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000001898, gene:ENSEOMG00000002509 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0007340, CQ.Regalona.r1.6BG0007940 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30218410 |
| Apiaceae | Apium graveolens | 3 | Ag6G02087, Ag8G01883, AgUnG00702 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G003740, COCNU_03G009890, COCNU_11G012840 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695941, gene-LOC103698624, gene-LOC120111270 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.57.V1.1, AsparagusV1_03.1576.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G03548, Ftri18G17748, Ftri7G21950 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G68050.1, AT2G18915.2, AT5G57360.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10013003m.g.v1.0, Thhalv10018284m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g32390.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g067910.2N, BniB03g067960.2N, BniB03g067980.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1119, Ceq09G0828 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1211, Cgl09G0870 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g07200, gene.Cymno11g08700 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g11570, gene.Thate04g24520, gene.Thate07g07220 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2459 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1232, evm.TU.LG07.160 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017341, Pov_00027674 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17095, Lb3G17104 |
| Poaceae | Echinochloa crus-galli | 8 | AH04.1566, AH06.2815, BH04.1579, BH06.2609, BH07.494 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0101720, gene-QOZ80_2BG0155110 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0369880.1, HORVU.MOREX.r3.6HG0560010.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_007521, gene-QYE76_020560, gene-QYE76_035848 ... |
| Poaceae | Oryza coarctata | 6 | Oco03G002570, Oco04G002510, Oco11G015910, Oco12G016230 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g05700.2, LOC_Os06g47890.2, LOC_Os11g34460.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G039600, gene-BS78_05G164600 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0202711, Pt_Chr0401164, Pt_Chr0405086, Pt_Chr0704529 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G032380, Chr06G034850, Chr07G016360, Chr10G021150 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel4E01G303100, Tel6E01G274600, Tel6E01G736800 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC4AG025480, gene_TRIDC4BG027180 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS4A02G164000.1, TraesCS4B02G157500.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb113780_P002, Zm00001eb201580_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45742 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18952, Zma_g31051, Zma_g33309 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2716, evm.TU.LG03.302, evm.TU.LG12.1403 ... |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g20000, gene.Posoc01g24720, gene.Posoc03g14740 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.759, evm.TU.Scaffold_4_RagTag.2045 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13290, nbisL1-mrna-23467, nbisL1-mrna-25454 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19475, nbisL1-mrna-7833 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-16694, nbisL1-mrna-20055, nbisL1-mrna-4810 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.1192, evm.TU.utg000013l.415 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000599, Maker00004325, Maker00014969 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10811, nbisL1-mrna-14262, nbisL1-mrna-16586 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-14283, nbisL1-mrna-14662, nbisL1-mrna-20961 |
| Salicaceae | Populus euphratica | 5 | populus_peu05422, populus_peu07219, populus_peu12039 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603361, gene-LOC132625858 |
| Solanaceae | Solanum chilense | 2 | SOLCI005539600, SOLCI007287500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007452, gene-LOC107025998 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.12691_chr02_+, STRG.8173_chr05_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3641, TC10G0832 |
| Zosteraceae | Zostera marina | 1 | Zosma05g26740.v3.1 |