Basic Information
Locus ID:
AgUnG00662
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg4305 | 138825 | 144355 | - | AgUnG00662 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.62 | 44,518.80 Da | 47.17 | 89.15 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 147 | 355 | 2.78E-9 | IPR029044 |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 133 | 376 | 6.8E-7 | IPR029044 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45320.1 | 0 | |
| RefSeq | XP_017231149.1 | PREDICTED: uncharacterized protein LOC108205660 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5BAE8 | Nucleotide-diphospho-sugar transferase OS=Apium graveolens OX=4045 GN=AG4045_021512 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.854223 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.161091 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.081244 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.992036 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.070199 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.814645 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.788101 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.014562 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.852061 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.362472 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.500022 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.28531 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.799879 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.828749 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.571278 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.029747 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.219168 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.952847 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.742955 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.572804 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.140378 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.829945 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.733527 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.026717 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.086539 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.206098 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.891579 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.435526 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.848475 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.056642 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.325849 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.114149 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.584492 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.734499 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.46702 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.370556 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.095853 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.652189 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.95543 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.906349 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.207956 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.978397 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.23353 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.877759 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.044761 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.452749 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.539252 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.497602 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.070025 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.153126 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg29239, jg622 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11630 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005002 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g072780 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg16549, Sbi_jg18010, Sbi_jg32279, Sbi_jg4924 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1219, Seu_jg12858, Seu_jg27403 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014405 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23840, Sgl29004 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009535, gene:ENSEOMG00000028959 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001590, CQ.Regalona.r1.4BG0001690 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30282290 |
| Apiaceae | Apium graveolens | 5 | Ag10G02089, Ag6G00119, AgUnG00662, AgUnG01262, AgUnG01271 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G015290 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702047 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2330.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G20632 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G45320.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001485m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g27340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g029600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0513 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0535 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g12650 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1583 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014915 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08429 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2082, BH06.1925, CH06.2124 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0543400, gene-QOZ80_6BG0496650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0716800.1 |
| Poaceae | Oryza coarctata | 1 | Oco11G011500 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g37430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G172500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400535, Pt_Chr0601868 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G029260, Chr05G006910, Chr10G016730, Chr11G005630 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG050630, gene_TRIDC7BG043290 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G362700.2, TraesCS7B02G266100.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb012290_P001, Zm00001eb084960_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10178, nbis-gene-41160 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30726, Zma_g32968 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1723, evm.TU.LG22.653 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g23540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.169 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19550, nbisL1-mrna-9104 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3952 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22259 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.101 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010548 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8065 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9729 |
| Salicaceae | Populus euphratica | 2 | populus_peu25556, populus_peu27856 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609452 |
| Solanaceae | Solanum chilense | 1 | SOLCI001249300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027134 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25257_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2660 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04120.v3.1 |