Basic Information
Locus ID:
AgUnG00640
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Calcium-binding EF hand family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg4220 | 92798 | 96722 | - | AgUnG00640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.44 | 20,431.10 Da | 43.88 | 99.00 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF47473 | EF-hand | 23 | 164 | 6.83E-13 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 4 | 161 | 1.1E-9 | - |
| SMART | SM00054 | efh_1 | 80 | 108 | 2.6 | IPR002048 |
| SMART | SM00054 | efh_1 | 30 | 58 | 0.93 | IPR002048 |
| SMART | SM00054 | efh_1 | 126 | 154 | 47.0 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 76 | 111 | 9.185384 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 26 | 61 | 10.580154 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 39 | 51 | - | IPR018247 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38810.2 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_021900547.1 | uncharacterized protein LOC110816602 [Carica papaya] | 0 |
| TrEMBL | A0A6L5B9D1 | EF-hand domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_009852 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 77.198212 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 76.325607 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 115.163017 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 85.216614 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 85.959015 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 76.344872 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 102.005394 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 77.915039 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 33.540585 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 31.336712 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 35.409584 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.754934 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.620667 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 31.517235 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 30.589886 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.076866 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 26.351858 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 33.970009 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 31.804344 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 43.417183 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 55.312557 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.060177 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.570051 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.037119 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.523297 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 30.491062 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 26.933992 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 32.394585 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 27.426973 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 59.398685 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 25.143652 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 34.609695 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 56.834667 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 49.639034 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 87.851067 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 51.188946 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 88.620674 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 71.903786 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 39.901726 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 33.410625 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 54.751038 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.0287 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.968961 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.905275 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.427261 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.552633 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.039624 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 55.199875 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 64.071915 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 56.862602 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg26167, jg28824, jg30344 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26646 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007659, Ah009753 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g214810 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12122, Sbi_jg47058 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21341 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020360 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl61536, Sgl61559 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016549, gene:ENSEOMG00000039243 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0003620, CQ.Regalona.r1.9AG0020950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30115910 |
| Apiaceae | Apium graveolens | 1 | AgUnG00640 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G001560, COCNU_10G001160 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703878, gene-LOC103719885, gene-LOC120108568 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2798.V1.1, AsparagusV1_04.1412.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G31067 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G38810.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025463m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g37010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g089560.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1646 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1777 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g10230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.250 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001516 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G13662 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2449, AH01.4330, BH01.2798, BH01.4644, CH01.3000 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0175560, gene-QOZ80_3AG0241200 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0190500.1, HORVU.MOREX.r3.4HG0391600.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069522 |
| Poaceae | Oryza coarctata | 4 | Oco05G008250, Oco06G008530, Oco19G001330, Oco20G001540 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g14590.1, LOC_Os10g09850.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G417000, gene-BS78_03G155800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101002, Pt_Chr0102054, Pt_Chr0703317 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G029570, Chr06G010440, Chr12G009950, Chr15G011930 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G715300, Tel4E01G388500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG060570, gene_TRIDC2BG064030 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G420000.1, TraesCS2B02G439100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb010730_P003, Zm00001eb224230_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2254, nbis-gene-42931 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13094, Zma_g1637 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1904, evm.TU.LG08.949, evm.TU.LG09.51 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g10180 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2196, evm.TU.Scaffold_2_RagTag.133 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-5077, nbisL1-mrna-5997 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11034, nbisL1-mrna-16895 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3350, nbisL1-mrna-9388 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.1154, evm.TU.utg000016l.155 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005129, Maker00016691 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14153, nbisL1-mrna-4713 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14116, nbisL1-mrna-21115 |
| Salicaceae | Populus euphratica | 2 | populus_peu08773, populus_peu36584 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599278 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008568 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12966_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0064 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23040.v3.1 |