halophFGD

Basic Information

Locus ID: AgUnG00632

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg4214	8197	14715	+	AgUnG00632

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.00	56,904.83 Da	40.28	71.38	-0.48

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	82	320	4.0E-22	IPR001245
SUPERFAMILY	SSF48452	TPR-like	397	500	5.81E-14	IPR011990
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	51	325	7.3E-44	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	43	144	1.0E-28	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	146	337	2.4E-44	-
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	394	502	1.0E-14	IPR011990
ProSiteProfiles	PS50011	Protein kinase domain profile.	69	324	20.230713	IPR000719
Coils	Coil	Coil	477	502	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K14500 (BR-signaling kinase [EC:2.7.11.1])

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G35230.1	BR-signaling kinase 1. Encodes BR-signaling kinase 1 (BSK1), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized.
RefSeq	XP_017247724.1	PREDICTED: probable serine/threonine-protein kinase At4g35230 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q944A7	Serine/threonine-protein kinase BSK1 OS=Arabidopsis thaliana OX=3702 GN=BSK1 PE=1 SV=1
TrEMBL	A0A6L5BAI8	Protein kinase domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_001600 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	49.470963	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	36.736748	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	42.417202	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	44.091915	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	47.300793	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	52.994724	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	42.613937	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	39.795197	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	76.674026	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	79.231987	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	73.882172	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	51.891048	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	50.041462	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	45.118916	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	50.994774	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	53.280396	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	22.073889	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	49.466808	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	48.469563	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	93.809685	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	67.160263	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	53.082371	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	51.474892	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	57.111286	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	55.5397	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	32.382427	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	28.956238	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	30.198137	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	30.498068	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	18.650988		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	21.044411		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	15.930253		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	27.866203		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	21.437939		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	25.493341		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	20.495403		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	13.824087		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	19.396456		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	29.413162	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	26.941227	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	26.16287	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	89.049416	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	98.670143	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	113.57711	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	104.699722	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	88.236511	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	89.989677	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	59.913433	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	55.171894	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	51.119175	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg11660, jg23038, jg836
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26354, gene_8662
Amaranthaceae	Atriplex hortensis	2	Ah009574, Ah035966
Amaranthaceae	Beta vulgaris	1	BVRB_9g212860
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg10983, Sbi_jg39895, Sbi_jg47342
Amaranthaceae	Salicornia europaea	2	Seu_jg14428, Seu_jg21616
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00014195, GOSA_00018793
Amaranthaceae	Suaeda glauca	6	Sgl12043, Sgl12243, Sgl17336, Sgl17472, Sgl55566, Sgl60784
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000011547, gene:ENSEOMG00000014884 ... gene:ENSEOMG00000019707, gene:ENSEOMG00000036747, gene:ENSEOMG00000039939, gene:ENSEOMG00000046193, gene:ENSEOMG00000049182
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0022600, CQ.Regalona.r1.1BG0001570 ... CQ.Regalona.r1.7BG0002070, CQ.Regalona.r1.9AG0022700
Anacardiaceae	Pistacia vera	2	pistato.v30048570, pistato.v30109000
Apiaceae	Apium graveolens	2	Ag10G00425, AgUnG00632
Arecaceae	Cocos nucifera	2	COCNU_07G014700, COCNU_07G014710
Arecaceae	Phoenix dactylifera	1	gene-LOC103708708
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.2405.V1.1, AsparagusV1_07.2249.V1.1
Asteraceae	Flaveria trinervia	2	Ftri17G27832, Ftri5G09139
Brassicaceae	Arabidopsis thaliana	2	AT1G50990.1, AT4G35230.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10010042m.g.v1.0, Thhalv10018415m.g.v1.0 ... Thhalv10024929m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g22710.v2.2, Sp7g33000.v2.2
Brassicaceae	Brassica nigra	4	BniB03g021210.2N, BniB03g044950.2N, BniB05g003150.2N ... BniB05g003170.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G0767, Ceq03G0769, Ceq07G1849
Casuarinaceae	Casuarina glauca	3	Cgl03G0862, Cgl03G0864, Cgl07G2024
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g09880, gene.Cymno10g03670
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g19590, gene.Thate08g20230
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5306
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG06.113
Plantaginaceae	Plantago ovata	4	Pov_00001772, Pov_00020478, Pov_00020553, Pov_00036941
Plumbaginaceae	Limonium bicolor	3	Lb1G02824, Lb1G05728, Lb3G19323
Poaceae	Echinochloa crus-galli	6	AH01.3045, AH01.5203, BH01.3387, BH01.5007, CH01.3630 ... CH01.5607
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0115350, gene-QOZ80_2BG0169140 ... gene-QOZ80_3AG0232620, gene-QOZ80_3BG0295330
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0054940.1, HORVU.MOREX.r3.4HG0409600.1
Poaceae	Lolium multiflorum	3	gene-QYE76_012339, gene-QYE76_012445, gene-QYE76_071119
Poaceae	Oryza coarctata	4	Oco05G002030, Oco06G002000, Oco19G009210, Oco20G009090
Poaceae	Oryza sativa	2	LOC_Os03g04050.1, LOC_Os10g39670.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G298300, gene-BS78_01G492200
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0503084
Poaceae	Sporobolus alterniflorus	8	Chr01G038150, Chr04G005210, Chr06G028520, Chr07G006350 ... Chr09G004030, Chr12G001430, Chr13G020950, Chr15G019740
Poaceae	Thinopyrum elongatum	2	Tel1E01G351200, Tel4E01G539400
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG030750, gene_TRIDC1BG036260 ... gene_TRIDC4BG055020, gene_TRIDC5AG071150
Poaceae	Triticum aestivum	6	TraesCS1A02G203400.1, TraesCS1B02G217500.1 ... TraesCS1D02G206900.1, TraesCS4B02G328200.1, TraesCS4D02G325200.1, TraesCS5A02G500000.1
Poaceae	Zea mays	3	Zm00001eb002610_P003, Zm00001eb022440_P002 ... Zm00001eb402560_P001
Poaceae	Zoysia japonica	2	nbis-gene-3011, nbis-gene-36216
Poaceae	Zoysia macrostachya	3	Zma_g12830, Zma_g2140, Zma_g4485
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.291, evm.TU.LG02.480, evm.TU.LG03.529 ... evm.TU.LG04.462, evm.TU.LG09.1725, evm.TU.LG12.1192
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g12750, gene.Posoc06g07460
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.2368, evm.TU.Scaffold_2_RagTag.39 ... evm.TU.Scaffold_7_RagTag.396
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-29, nbisL1-mrna-43, nbisL1-mrna-5193
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-6216, nbisL1-mrna-6304, nbisL1-mrna-8284
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-3205, nbisL1-mrna-6902, nbisL1-mrna-9307
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000002l.815, evm.TU.utg000009l.1215 ... evm.TU.utg000016l.29
Rhizophoraceae	Kandelia obovata	3	Maker00005558, Maker00010775, Maker00017020
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-14088, nbisL1-mrna-4587, nbisL1-mrna-8776
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-20093, nbisL1-mrna-22500, nbisL1-mrna-24130
Salicaceae	Populus euphratica	5	populus_peu08620, populus_peu08621, populus_peu15453 ... populus_peu33096, populus_peu36721
Solanaceae	Lycium barbarum	1	gene-LOC132628188
Solanaceae	Solanum chilense	1	SOLCI006961100
Solanaceae	Solanum pennellii	1	gene-LOC107017214
Tamaricaceae	Reaumuria soongarica	2	STRG.31414_chr11_-, gene_8836
Tamaricaceae	Tamarix chinensis	3	TC04G2468, TC10G0220, TC12G0819
Zosteraceae	Zostera marina	3	Zosma01g10900.v3.1, Zosma03g26370.v3.1, Zosma05g31900.v3.1