halophFGD

Basic Information

Locus ID: AgUnG00600

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: LRR receptor-like serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg3812	115428	118715	-	AgUnG00600

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.42	80,431.86 Da	38.55	98.76	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	437	703	6.5E-21	IPR000719
SUPERFAMILY	SSF52058	L domain-like	44	306	7.48E-36	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	414	705	1.11E-41	IPR011009
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	30	198	3.7E-23	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	199	327	8.7E-21	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	517	716	8.3E-28	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	394	503	4.8E-21	-
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	156	178	7.296117	IPR001611
ProSiteProfiles	PS50011	Protein kinase domain profile.	433	706	22.803101	IPR000719

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G14390.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017227410.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390 [Daucus carota subsp. sativus]
Swiss-Prot	Q9M9S4	Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana OX=3702 GN=At1g14390 PE=1 SV=1
TrEMBL	A0A6L5BAM4	Protein kinase domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_003984 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.471293	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.705577	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.639743	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.797417	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.675502	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.281756	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.637467	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.132494	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	13.206225	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	12.488246	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	14.936655	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	17.855654	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	16.51882	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	12.306576	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	26.788597	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	29.111113	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	31.788717	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	46.335648	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	51.676102	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	36.110565	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	26.462824	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	25.716312	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	41.909298	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	25.825878	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	30.783642	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	40.383411	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	51.476841	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	32.621628	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	50.039391	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.291998		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.479468		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.347507		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.716757		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.103838		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.244164		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.127027		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.088561		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.069133		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	15.90008	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	10.518893	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.584321	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.106205	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	38.966106	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	19.720823	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	25.72505	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.977117	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	85.195168	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	14.161592	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	8.748613	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	12.917419	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg34740, jg9365
Aizoaceae	Mesembryanthemum crystallinum	1	gene_3742
Amaranthaceae	Atriplex hortensis	1	Ah014065
Amaranthaceae	Beta vulgaris	1	BVRB_6g154470
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg43140, Sbi_jg45739
Amaranthaceae	Salicornia europaea	1	Seu_jg11588
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00026534
Amaranthaceae	Suaeda glauca	2	Sgl36001, Sgl41331
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000001686, gene:ENSEOMG00000012095 ... gene:ENSEOMG00000025010
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.6AG0001640, CQ.Regalona.r1.6BG0001750
Anacardiaceae	Pistacia vera	1	pistato.v30126480
Apiaceae	Apium graveolens	3	Ag8G01404, Ag8G01406, AgUnG00600
Arecaceae	Cocos nucifera	1	COCNU_03G015840
Arecaceae	Phoenix dactylifera	1	gene-LOC103709770
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.2308.V1.1, AsparagusV1_01.2309.V1.1 ... AsparagusV1_06.812.V1.1
Asteraceae	Flaveria trinervia	1	Ftri5G07693
Brassicaceae	Arabidopsis thaliana	2	AT1G14390.1, AT2G02780.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10003702m.g.v1.0, Thhalv10006929m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g12760.v2.2, Sp2g13880.v2.2
Brassicaceae	Brassica nigra	2	BniB02g065570.2N, BniB06g039520.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G0060
Casuarinaceae	Casuarina glauca	2	Cgl07G0050, Cgl07G0051
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno16g00810
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g24210, gene.Thate09g13900
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG03.206
Plantaginaceae	Plantago ovata	1	Pov_00027217
Plumbaginaceae	Limonium bicolor	3	Lb1G02049, Lb2G13280, Lb7G34590
Poaceae	Echinochloa crus-galli	3	AH06.2141, BH06.1953, CH06.2176
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0543760, gene-QOZ80_6BG0497140
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0715280.1
Poaceae	Lolium multiflorum	2	gene-QYE76_034651, gene-QYE76_034799
Poaceae	Oryza coarctata	2	Oco11G011850, Oco12G012020
Poaceae	Oryza sativa	1	LOC_Os06g38970.1
Poaceae	Paspalum vaginatum	1	gene-BS78_10G176800
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0302876, Pt_Chr0400574
Poaceae	Sporobolus alterniflorus	4	Chr02G029440, Chr05G007140, Chr10G017180, Chr11G005310
Poaceae	Thinopyrum elongatum	2	Tel7E01G609100, Tel7E01G610000
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG051400, gene_TRIDC7BG042510
Poaceae	Triticum aestivum	3	TraesCS7A02G368000.1, TraesCS7B02G260600.1 ... TraesCS7D02G354900.1
Poaceae	Zea mays	1	Zm00001eb386180_P003
Poaceae	Zoysia japonica	5	nbis-gene-10143, nbis-gene-41125, nbis-gene-55226 ... nbis-gene-57205, nbis-gene-57768
Poaceae	Zoysia macrostachya	2	Zma_g30751, Zma_g32994
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.279, evm.TU.LG12.1427, evm.TU.LG13.334 ... evm.TU.LG21.40
Posidoniaceae	Posidonia oceanica	1	gene.Posoc09g10890
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_17_RagTag.344
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-22985
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-309
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-14869
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000013l.238
Rhizophoraceae	Kandelia obovata	1	Maker00006586
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-7148
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-15761
Salicaceae	Populus euphratica	1	populus_peu03115
Solanaceae	Lycium barbarum	1	gene-LOC132641524
Solanaceae	Solanum chilense	1	SOLCI002991400
Solanaceae	Solanum pennellii	1	gene-LOC107020638
Tamaricaceae	Reaumuria soongarica	1	STRG.29263_chr10_-
Tamaricaceae	Tamarix chinensis	1	TC03G0653
Zosteraceae	Zostera marina	2	Zosma01g05790.v3.1, Zosma01g37730.v3.1