Basic Information
Locus ID:
AgUnG00583
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg3786 | 8086 | 8577 | + | AgUnG00583 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 6,752.96 Da | 43.61 | 109.39 | 0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TrEMBL | A0A6L5BCM6 | Secreted protein OS=Apium graveolens OX=4045 GN=AG4045_015297 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.164928 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.310754 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.605412 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.944666 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.152247 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.138519 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.981092 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.098275 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.432309 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.125079 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.313338 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.098478 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.446414 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.689255 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 221.336624 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 204.051193 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 206.737747 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 330.135345 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 200.836929 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 389.444092 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 182.600693 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 115.820694 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 151.297363 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 106.828392 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 120.48835 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 118.481377 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 299.38205 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 80.397301 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 147.298721 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.520031 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.13641 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.180791 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.533459 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.251037 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.180046 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.707364 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.306117 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.395511 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.702769 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.454157 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.977243 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.749039 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 80.712761 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.898911 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.319638 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.769727 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.787972 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 106.478073 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 29.086273 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 50.215286 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1629, jg29049, jg31311, jg33268 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_4680, gene_4681 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah021701, Ah021702, Ah021704, Ah021705 |
| Amaranthaceae | Beta vulgaris | 8 | BVRB_3g061030, BVRB_3g061040, BVRB_3g061050, BVRB_3g061060 ... |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21784, Sbi_jg22037, Sbi_jg63371, Sbi_jg63374 |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg15964, Seu_jg23518, Seu_jg23520, Seu_jg23521 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23766, Sgl23767 |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.3AG0020350, CQ.Regalona.r1.3AG0020360 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30187040, pistato.v30187050 |
| Apiaceae | Apium graveolens | 9 | Ag2G01495, Ag2G01506, Ag3G01497, Ag3G01498, Ag9G02277 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G10213, Ftri10G28912, Ftri12G31925, Ftri15G30126 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-8471, nbisL1-mrna-8472, nbisL1-mrna-8724 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2445 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001165, Pov_00016835 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.1471, evm.TU.LG04.1472, evm.TU.LG05.1994 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1200, evm.TU.Scaffold_1_RagTag.1202 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18854, nbisL1-mrna-4228 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000009l.188, add.evm.TU.utg000016l.330 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00016547, Maker00016555 |
| Rhizophoraceae | Rhizophora apiculata | 5 | nbisL1-mrna-21108, nbisL1-mrna-21109, nbisL1-mrna-21110 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13394, nbisL1-mrna-5586, nbisL1-mrna-5587 |
| Salicaceae | Populus euphratica | 8 | populus_peu01849, populus_peu10994, populus_peu10996 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI003449900, SOLCI004691100, SOLCI004691200 |
| Tamaricaceae | Reaumuria soongarica | 8 | gene_12868, gene_12870, gene_6977, gene_6978, gene_6979 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1470 |