halophFGD

Basic Information

Locus ID: AgUnG00573

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: 60s ribosomal protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg3773	41496	43754	+	AgUnG00573

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.20	25,255.43 Da	36.57	78.74	-0.39

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03868	Ribosomal protein L6, N-terminal domain	5	60	7.0E-16	IPR005568
SUPERFAMILY	SSF50104	Translation proteins SH3-like domain	86	150	1.47E-10	IPR008991
Gene3D	G3DSA:2.30.30.30	-	86	127	1.2E-5	IPR014722

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome)

Cellular Component:

GO:0005840 (ribosome)

KEGG Pathway

KO Term:

K02934 (large subunit ribosomal protein L6e)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G74050.1	Ribosomal protein L6 family protein.
RefSeq	XP_017248442.1	PREDICTED: 60S ribosomal protein L6-3-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9C9C5	Large ribosomal subunit protein eL6x OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1
TrEMBL	A0A6L5BAP6	Ribosomal_L6e_N domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_008723 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	157.746658	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	98.68631	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	59.894661	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	50.204609	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	55.728962	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	56.412498	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	55.70562	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	41.202686	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	241.088531	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	250.904236	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	246.959427	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	272.33606	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	249.438446	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	246.40123	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	51.330219	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	123.170403	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	100.354027	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	75.992805	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	118.387184	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	135.826126	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	90.067192	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	138.77739	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	120.796844	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	153.340012	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	166.106522	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	126.684608	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	94.781769	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	133.933441	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	88.505844	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	51.704453		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	105.996506		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	100.937057		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	108.250717		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	128.822556		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	120.008644		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	81.379021		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	54.025272		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	62.812813		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	142.384964	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	51.849007	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	27.487377	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	153.653305	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	74.87635	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	216.78801	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	111.369087	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	194.143784	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	99.83075	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	187.369232	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	142.306686	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	130.163116	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg12242, jg12244, jg23298, jg28247, jg6526
Aizoaceae	Mesembryanthemum crystallinum	1	gene_4699
Amaranthaceae	Atriplex hortensis	2	Ah004858, Ah021576
Amaranthaceae	Beta vulgaris	2	BVRB_3g060660, BVRB_6g146010
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg21795, Sbi_jg22023, Sbi_jg59225, Sbi_jg63403
Amaranthaceae	Salicornia europaea	2	Seu_jg15951, Seu_jg23487
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00008570
Amaranthaceae	Suaeda glauca	5	Sgl02652, Sgl07810, Sgl63056, Sgl63063, Sgl67672
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000012494, gene:ENSEOMG00000016469 ... gene:ENSEOMG00000019276, gene:ENSEOMG00000020308, gene:ENSEOMG00000020755, gene:ENSEOMG00000031867, gene:ENSEOMG00000046470, gene:ENSEOMG00000048906, gene:ENSEOMG00000051565
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2AG0015030, CQ.Regalona.r1.2AG0016670 ... CQ.Regalona.r1.2BG0017120, CQ.Regalona.r1.2BG0018470, CQ.Regalona.r1.3AG0020070, CQ.Regalona.r1.3BG0020770
Anacardiaceae	Pistacia vera	1	pistato.v30013030
Apiaceae	Apium graveolens	3	Ag10G03038, Ag2G00199, AgUnG00573
Arecaceae	Cocos nucifera	4	COCNU_01G006940, COCNU_01G011870, COCNU_11G006990 ... COCNU_11G010550
Arecaceae	Phoenix dactylifera	5	gene-LOC103702300, gene-LOC103705376, gene-LOC103711393 ... gene-LOC103714953, gene-LOC120107477
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.3336.V1.1, AsparagusV1_05.704.V1.1
Asteraceae	Flaveria trinervia	5	Ftri11G03211, Ftri12G01443, Ftri12G03269, Ftri5G08022 ... FtriNA25453
Brassicaceae	Arabidopsis thaliana	3	AT1G18540.1, AT1G74050.1, AT1G74060.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10008650m.g.v1.0, Thhalv10019079m.g.v1.0 ... Thhalv10019083m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g16490.v2.2, Sp5g29290.v2.2, Sp6g12740.v2.2 ... SpUn0834_0010.v2.2
Brassicaceae	Brassica nigra	6	BniB03g007650.2N, BniB03g028080.2N, BniB03g038570.2N ... BniB03g052510.2N, BniB04g033060.2N, BniB05g070950.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G1131, Ceq05G0515
Casuarinaceae	Casuarina glauca	2	Cgl04G1299, Cgl05G0545
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g07690, gene.Cymno05g08250
Dunaliellaceae	Dunaliella salina	1	Dusal.0521s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate07g20680, gene.Thate07g20700
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6045
Nitrariaceae	Nitraria sibirica	4	evm.TU.Contig6.8, evm.TU.LG03.24, evm.TU.LG03.37 ... evm.TU.LG05.503
Plantaginaceae	Plantago ovata	2	Pov_00021915, Pov_00037625
Plumbaginaceae	Limonium bicolor	4	Lb1G08063, Lb5G28062, Lb6G30606, Lb7G34263
Poaceae	Echinochloa crus-galli	5	AH01.4078, AH07.2416, BH09.1450, CH07.2300, CH09.1560
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0135850, gene-QOZ80_2BG0191380 ... gene-QOZ80_4AG0313780, gene-QOZ80_4BG0344930
Poaceae	Lolium multiflorum	5	gene-QYE76_021837, gene-QYE76_023362, gene-QYE76_023376 ... gene-QYE76_031903, gene-QYE76_041660
Poaceae	Oryza coarctata	4	Oco03G014020, Oco04G014410, Oco07G008390, Oco08G008290
Poaceae	Oryza sativa	2	LOC_Os02g37862.1, LOC_Os04g39700.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G179300, gene-BS78_06G131600
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0204399, Pt_Chr0206381
Poaceae	Sporobolus alterniflorus	8	Chr06G008700, Chr09G012950, Chr13G008820, Chr15G010240 ... Chr23G010770, Chr25G008980, Chr26G008990, Chr30G008860
Poaceae	Thinopyrum elongatum	2	Tel6E01G370600, Tel6E01G400800
Poaceae	Triticum dicoccoides	4	gene_TRIDC6AG029710, gene_TRIDC6AG031340 ... gene_TRIDC6BG036900, gene_TRIDC6BG037750
Poaceae	Triticum aestivum	5	TraesCS6A02G204900.1, TraesCS6B02G225600.1 ... TraesCS6B02G230300.2, TraesCS6D02G180100.1, TraesCS6D02G190100.1
Poaceae	Zea mays	6	Zm00001eb138180_P001, Zm00001eb183410_P001 ... Zm00001eb183420_P001, Zm00001eb245740_P001, Zm00001eb424070_P001, Zm00001eb424800_P001
Poaceae	Zoysia japonica	4	nbis-gene-18668, nbis-gene-29786, nbis-gene-36866 ... nbis-gene-7417
Poaceae	Zoysia macrostachya	4	Zma_g13792, Zma_g16588, Zma_g19902, Zma_g21453
Portulacaceae	Portulaca oleracea	4	evm.TU.LG07.212, evm.TU.LG15.752, evm.TU.LG16.1313 ... evm.TU.LG20.1295
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g17450, gene.Posoc03g10820
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_14_RagTag.487, evm.TU.Scaffold_14_RagTag.488 ... evm.TU.Scaffold_7_RagTag.343
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-18925, nbisL1-mrna-9159
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-8149, nbisL1-mrna-8150
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-6950, nbisL1-mrna-6951, nbisL1-mrna-6952
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000028l.218
Rhizophoraceae	Kandelia obovata	1	Maker00010805
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-16220, nbisL1-mrna-8817
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10624, nbisL1-mrna-20137
Salicaceae	Populus euphratica	3	populus_peu01819, populus_peu26158, populus_peu35991
Solanaceae	Lycium barbarum	3	gene-LOC132613906, gene-LOC132614049, gene-LOC132637123
Solanaceae	Solanum chilense	3	SOLCI002105300, SOLCI002388900, SOLCI004727400
Solanaceae	Solanum pennellii	3	gene-LOC107004885, gene-LOC107017663, gene-LOC107020772
Tamaricaceae	Reaumuria soongarica	4	STRG.21794_chr08_-, STRG.4897_chr03_+, STRG.7323_chr04_- ... gene_380
Tamaricaceae	Tamarix chinensis	2	TC05G1442, TC05G1972
Zosteraceae	Zostera marina	1	Zosma04g16030.v3.1