Basic Information
Locus ID:
AgUnG00530
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Serine threonine-protein kinase GCN2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg3625 | 44780 | 68548 | + | AgUnG00530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 116,340.35 Da | 51.93 | 82.90 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14046 | STKc_EIF2AK4_GCN2_rpt2 | 380 | 687 | 2.89047E-137 | - |
| Pfam | PF05773 | RWD domain | 33 | 122 | 5.4E-10 | IPR006575 |
| Pfam | PF13393 | Histidyl-tRNA synthetase | 842 | 1026 | 1.3E-5 | IPR041715 |
| Pfam | PF00069 | Protein kinase domain | 387 | 689 | 5.1E-50 | IPR000719 |
| SUPERFAMILY | SSF55681 | Class II aaRS and biotin synthetases | 750 | 1026 | 4.12E-20 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 383 | 703 | 1.6E-66 | IPR011009 |
| SUPERFAMILY | SSF54495 | UBC-like | 31 | 122 | 4.94E-14 | IPR016135 |
| Gene3D | G3DSA:3.30.930.10 | Bira Bifunctional Protein; Domain 2 | 748 | 1026 | 4.1E-40 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 506 | 697 | 1.2E-45 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 375 | 503 | 1.8E-32 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 25 | 133 | 4.0E-18 | IPR016135 |
| SMART | SM00591 | RWD2001b | 37 | 145 | 1.8E-8 | IPR006575 |
| ProSiteProfiles | PS50908 | RWD domain profile. | 37 | 144 | 12.562702 | IPR006575 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 387 | 690 | 41.940536 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 393 | 416 | - | IPR017441 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 542 | 554 | - | IPR008266 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| Coils | Coil | Coil | 217 | 237 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59410.1 | protein kinase family protein. | 0 |
| RefSeq | XP_017217532.1 | PREDICTED: eIF-2-alpha kinase GCN2 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9LX30 | eIF-2-alpha kinase GCN2 OS=Arabidopsis thaliana OX=3702 GN=GCN2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6L5BAE3 | non-specific serine/threonine protein kinase OS=Apium graveolens OX=4045 GN=AG4045_011080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.976911 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.56848 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.830545 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.093184 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.969167 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.915073 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.314463 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.041222 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.164841 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.072497 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.70761 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.851016 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.267225 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.285413 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.340857 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.523476 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.170598 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.751326 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.37513 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.2316 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.849841 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.639182 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.45576 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.420666 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.177582 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.486467 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.864398 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.584286 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.580582 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.359516 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.375717 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.766256 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.486165 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.176371 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.627591 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.75573 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.726684 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.708214 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.766683 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.6559 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.397702 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.306216 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.934656 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.379213 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.205862 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.823714 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.49892 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.726217 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.884723 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.178148 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27616 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2896 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah019387, Ah036333 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g057120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15230, Sbi_jg56041 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26524 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006316 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01738, Sgl01741, Sgl06900 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000013908, gene:ENSEOMG00000031252 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0009870, CQ.Regalona.r1.3BG0010010 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30244140 |
| Apiaceae | Apium graveolens | 2 | Ag5G02837, AgUnG00530 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G012600, COCNU_02G012610 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708605 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.470.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G13837 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G59410.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005755m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g03730.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g073650.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1448 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1541 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g11000 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0137s00008.v1.0, Dusal.0137s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g21560 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4251 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.187 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025198 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25713 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1401, BH09.1588, CH09.1708 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0312470, gene-QOZ80_4AG0312480 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0177670.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044846 |
| Poaceae | Oryza coarctata | 1 | Oco08G009280 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g41510.1, LOC_Os04g41530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G144600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302298, Pt_Chr0307175 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr25G009740, Chr30G009580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G607000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG050550, gene_TRIDC2BG053750 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G349200.3, TraesCS2B02G367600.4 ... |
| Poaceae | Zea mays | 1 | Zm00001eb078800_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-5128, nbis-gene-58808 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21519 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1408, evm.TU.LG07.1475 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g06860 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1486 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1803 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20556 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2714 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.342 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002101 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15794 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12868 |
| Salicaceae | Populus euphratica | 1 | populus_peu22604 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643742 |
| Solanaceae | Solanum chilense | 4 | SOLCI002746500, SOLCI002746700, SOLCI004340500 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004566 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5319 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G1310, TC06G1313 |
| Zosteraceae | Zostera marina | 1 | Zosma04g02150.v3.1 |