halophFGD

Basic Information

Locus ID: AgUnG00506

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Domain of unknown function (DUF2828)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg3421	100469	102706	+	AgUnG00506

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.42	75,638.05 Da	37.02	81.24	-0.39

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF11443	Domain of unknown function (DUF2828)	48	644	4.5E-203	IPR011205
Gene3D	G3DSA:3.40.50.410	von Willebrand factor, type A domain	452	635	2.9E-6	IPR036465
PIRSF	PIRSF015417	T31B5_30_vWA	570	662	2.6E-40	IPR011205
PIRSF	PIRSF015417	T31B5_30_vWA	9	575	7.5E-196	IPR011205
Coils	Coil	Coil	236	256	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT5G13210.1	Uncharacterised conserved protein UCP015417, vWA.
RefSeq	XP_017253884.1	PREDICTED: uncharacterized protein LOC108223922 [Daucus carota subsp. sativus]
TrEMBL	A0A6L5BAI2	DUF2828 domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_004542 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	21.338091	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	22.156031	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	20.059818	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	23.273754	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	22.125992	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	11.852306	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	16.008745	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.59155	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	21.746382	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	23.708111	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	23.876532	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	24.831703	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	24.155228	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	24.050674	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	17.11779	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	18.296421	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	20.762367	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	20.463795	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	16.49361	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	14.717421	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	16.337793	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	18.190617	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	16.506998	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	15.618279	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	19.675661	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	21.907658	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	22.737181	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	21.749794	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	24.598473	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.073689		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.12752		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.178078		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	13.819262		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	10.61515		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	14.225738		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	12.315874		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	5.974633		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	8.216763		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	8.759501	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	6.983232	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.412988	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	9.304379	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	10.58254	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	27.161104	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	21.826765	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	9.919833	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	30.86215	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	11.842834	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	14.386723	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	14.714067	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg27784, jg27785, jg27786, jg32805
Aizoaceae	Mesembryanthemum crystallinum	3	gene_22950, gene_3047, gene_3048
Amaranthaceae	Atriplex hortensis	5	Ah014299, Ah018315, Ah018316, Ah021148, Ah024199
Amaranthaceae	Beta vulgaris	3	BVRB_1g010460, BVRB_3g049230, BVRB_3g049240
Amaranthaceae	Salicornia bigelovii	16	Sbi_jg14782, Sbi_jg14783, Sbi_jg14784, Sbi_jg28154 ... Sbi_jg30123, Sbi_jg50831, Sbi_jg50832, Sbi_jg50834, Sbi_jg50835, Sbi_jg50836, Sbi_jg50837, Sbi_jg55559, Sbi_jg55562, Sbi_jg55563, Sbi_jg59121, Sbi_jg59122
Amaranthaceae	Salicornia europaea	7	Seu_jg23384, Seu_jg23385, Seu_jg26115, Seu_jg26116 ... Seu_jg26117, Seu_jg26118, Seu_jg7280
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00012807, GOSA_00020122, GOSA_00020123, GOSA_00020124
Amaranthaceae	Suaeda glauca	16	Sgl01010, Sgl01011, Sgl02516, Sgl06116, Sgl06117, Sgl07671 ... Sgl10415, Sgl15685, Sgl35044, Sgl35704, Sgl35705, Sgl35706, Sgl40434, Sgl41021, Sgl41022, Sgl41023
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000015947, gene:ENSEOMG00000028120 ... gene:ENSEOMG00000032039, gene:ENSEOMG00000035173, gene:ENSEOMG00000047324, gene:ENSEOMG00000047779
Amaranthaceae	Chenopodium quinoa	12	CQ.Regalona.r1.1AG0013380, CQ.Regalona.r1.1BG0012720 ... CQ.Regalona.r1.3AG0007900, CQ.Regalona.r1.3AG0007910, CQ.Regalona.r1.3AG0018150, CQ.Regalona.r1.3AG0019340, CQ.Regalona.r1.3BG0007930, CQ.Regalona.r1.3BG0007940, CQ.Regalona.r1.3BG0007950, CQ.Regalona.r1.3BG0018220, CQ.Regalona.r1.3BG0019990, CQ.Regalona.r1.6BG0003200
Anacardiaceae	Pistacia vera	2	pistato.v30229150, pistato.v30235200
Apiaceae	Apium graveolens	20	Ag10G01402, Ag10G01403, Ag10G01404, Ag1G01786, Ag1G01799 ... Ag1G01800, Ag1G01804, Ag1G01805, Ag1G01806, Ag2G02407, Ag9G01708, Ag9G01709, Ag9G01727, Ag9G01728, Ag9G01729, Ag9G01731, Ag9G01732, Ag9G01733, Ag9G01826, AgUnG00506
Arecaceae	Cocos nucifera	1	COCNU_09G001210
Arecaceae	Phoenix dactylifera	1	gene-LOC103723376
Asparagaceae	Asparagus officinalis	3	AsparagusV1_07.283.V1.1, AsparagusV1_07.284.V1.1 ... AsparagusV1_07.285.V1.1
Brassicaceae	Arabidopsis thaliana	4	AT3G24780.1, AT5G13210.1, AT5G43390.1, AT5G43400.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10003164m.g.v1.0, Thhalv10012951m.g.v1.0 ... Thhalv10015490m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g08280.v2.2
Brassicaceae	Brassica nigra	5	BniB02g049250.2N, BniB02g060870.2N, BniB03g065950.2N ... BniB08g051930.2N, BniB08g051950.2N
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g15560
Dunaliellaceae	Dunaliella salina	5	Dusal.0184s00019.v1.0, Dusal.0336s00001.v1.0 ... Dusal.1140s00003.v1.0, Dusal.1140s00005.v1.0, Dusal.1140s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate07g00190
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.845, evm.TU.LG03.846, evm.TU.LG03.847
Plantaginaceae	Plantago ovata	2	Pov_00000184, Pov_00021604
Plumbaginaceae	Limonium bicolor	4	Lb2G12814, Lb2G12815, Lb2G12818, Lb2G12829
Poaceae	Echinochloa crus-galli	25	AH02.3786, AH05.590, AH06.2490, AH06.2491, AH06.2494 ... AH07.2311, AH07.2312, AH07.494, AH07.580, AH08.985, BH02.3800, BH05.639, BH06.2145, BH06.2290, BH07.707, BH08.1024, BH08.1025, CH02.4674, CH05.739, CH06.2366, CH06.2508, CH06.2509, CH06.2511, CH07.587, CH08.1136
Poaceae	Eleusine coracana subsp. coracana	17	gene-QOZ80_1AG0047750, gene-QOZ80_2AG0103720 ... gene-QOZ80_6AG0515970, gene-QOZ80_6AG0545420, gene-QOZ80_6AG0546740, gene-QOZ80_6AG0546750, gene-QOZ80_6AG0546760, gene-QOZ80_6AG0546780, gene-QOZ80_6BG0467720, gene-QOZ80_6BG0498910, gene-QOZ80_6BG0500150, gene-QOZ80_6BG0500160, gene-QOZ80_6BG0500200, gene-QOZ80_8AG0625030, gene-QOZ80_8AG0625040, gene-QOZ80_8BG0653640, gene-QOZ80_8BG0653650
Poaceae	Hordeum vulgare	9	HORVU.MOREX.r3.3HG0330470.1, HORVU.MOREX.r3.5HG0496490.1 ... HORVU.MOREX.r3.5HG0496510.1.CDS1, HORVU.MOREX.r3.5HG0498740.1.CDS1, HORVU.MOREX.r3.6HG0550280.1.CDS1, HORVU.MOREX.r3.6HG0569310.1.CDS1, HORVU.MOREX.r3.6HG0569440.1.CDS1, HORVU.MOREX.r3.7HG0742180.1.CDS1, HORVU.MOREX.r3.7HG0742190.1.CDS1
Poaceae	Lolium multiflorum	23	gene-QYE76_012403, gene-QYE76_021037, gene-QYE76_021038 ... gene-QYE76_037122, gene-QYE76_037124, gene-QYE76_037125, gene-QYE76_037126, gene-QYE76_037127, gene-QYE76_037128, gene-QYE76_037130, gene-QYE76_037131, gene-QYE76_037132, gene-QYE76_053314, gene-QYE76_055087, gene-QYE76_058877, gene-QYE76_058878, gene-QYE76_059161, gene-QYE76_059162, gene-QYE76_059163, gene-QYE76_060754, gene-QYE76_065071, gene-QYE76_068822, gene-QYE76_069718
Poaceae	Oryza coarctata	9	Oco01G031290, Oco02G032450, Oco03G004040, Oco04G003990 ... Oco11G014110, Oco12G014300, Oco17G008520, Oco18G008610, Oco18G008620
Poaceae	Oryza sativa	7	LOC_Os01g27530.1, LOC_Os02g08330.1, LOC_Os05g46100.1 ... LOC_Os06g44240.1, LOC_Os09g32360.1, LOC_Os09g32370.1, LOC_Os12g04770.1
Poaceae	Paspalum vaginatum	7	gene-BS78_03G136900, gene-BS78_03G137000, gene-BS78_K073500 ... gene-BS78_03G327600, gene-BS78_04G059800, gene-BS78_10G211100, gene-BS78_K073600
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0202324, Pt_Chr0207471, Pt_Chr0401472, Pt_Chr0401473 ... Pt_Chr0401476, Pt_Chr0500375
Poaceae	Sporobolus alterniflorus	12	Chr02G031110, Chr02G031120, Chr05G008810, Chr05G008820 ... Chr05G034080, Chr0G000310, Chr0G000320, Chr11G018470, Chr12G011360, Chr26G009710, Chr29G008340, Chr29G008350
Poaceae	Thinopyrum elongatum	17	Tel1E01G542500, Tel2E01G462600, Tel3E01G398700 ... Tel5E01G176300, Tel5E01G485700, Tel5E01G486300, Tel5E01G508400, Tel6E01G171200, Tel6E01G308300, Tel6E01G308500, Tel6E01G308600, Tel7E01G683800, Tel7E01G683900, Tel7E01G862600, Tel7E01G862700, Tel7E01G863200, Tel7E01G872100
Poaceae	Triticum dicoccoides	21	gene_TRIDC1AG052150, gene_TRIDC1BG059420 ... gene_TRIDC3BG087340, gene_TRIDC4AG013860, gene_TRIDC5AG045220, gene_TRIDC5AG045230, gene_TRIDC5BG049040, gene_TRIDC5BG051070, gene_TRIDC6AG008980, gene_TRIDC6AG020530, gene_TRIDC6BG026450, gene_TRIDC6BG026480, gene_TRIDC7AG007070, gene_TRIDC7AG055830, gene_TRIDC7AG070430, gene_TRIDC7AG071240, gene_TRIDC7BG030580, gene_TRIDC7BG048150, gene_TRIDC7BG065030, gene_TRIDC7BG065040, gene_TRIDC7BG065870
Poaceae	Triticum aestivum	35	TraesCS1A02G354300.1.cds1, TraesCS1B02G367400.1.cds1 ... TraesCS1D02G356100.1.cds1, TraesCS3B02G607400.1.cds1, TraesCS3D02G541900.1.cds1, TraesCS5A02G302500.1.cds1, TraesCS5A02G302600.1.cds1, TraesCS5A02G319700.1, TraesCS5B02G302800.1.cds1, TraesCS5B02G302900.1.cds1, TraesCS5B02G319900.1, TraesCS5B02G320000.1.cds1, TraesCS5D02G309200.1.cds1, TraesCS5D02G309300.1.cds1, TraesCS5D02G325700.1, TraesCS6A02G073400.1.cds1, TraesCS6A02G148700.1.cds1, TraesCS6A02G149200.1.cds1, TraesCS6B02G098400.1.cds1, TraesCS6B02G176900.1.cds1, TraesCS6B02G177100.1.cds1, TraesCS6D02G071700.1.cds1, TraesCS6D02G138100.1.cds1, TraesCS6D02G138500.1.cds1, TraesCS7A02G503000.1, TraesCS7B02G301000.1.cds1, TraesCS7B02G410400.1.cds1, TraesCS7B02G410500.1.cds1, TraesCS7B02G410900.1, TraesCS7B02G417500.1.cds1, TraesCS7D02G394600.1.cds1, TraesCS7D02G490400.1.cds1, TraesCS7D02G490500.1.cds1, TraesCS7D02G490900.1, TraesCS7D02G496700.1.cds1
Poaceae	Zea mays	7	Zm00001eb206670_P001, Zm00001eb217520_P001 ... Zm00001eb217530_P001, Zm00001eb220150_P001, Zm00001eb220160_P001, Zm00001eb220170_P001, Zm00001eb385690_P001
Poaceae	Zoysia japonica	4	nbis-gene-44180, nbis-gene-9878, nbis-gene-9879 ... nbis-gene-9880
Poaceae	Zoysia macrostachya	1	Zma_g15062
Portulacaceae	Portulaca oleracea	4	evm.TU.LG09.1322, evm.TU.LG11.1278, evm.TU.LG11.1433 ... evm.TU.LG21.301
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g34730, gene.Posoc05g06670
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_15_RagTag.916, evm.TU.Scaffold_17_RagTag.140 ... evm.TU.Scaffold_3_RagTag.1268
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-15830, nbisL1-mrna-1591, nbisL1-mrna-27102 ... nbisL1-mrna-27287, nbisL1-mrna-4803
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11399, nbisL1-mrna-18926, nbisL1-mrna-6003
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-14656, nbisL1-mrna-15499, nbisL1-mrna-15500 ... nbisL1-mrna-2525, nbisL1-mrna-2526
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000001l.258, add.evm.TU.utg000001l.259 ... add.evm.TU.utg000011l.211, add.evm.TU.utg000013l.25, add.evm.TU.utg000019l.199
Rhizophoraceae	Kandelia obovata	3	Maker00001726, Maker00002458, Maker00002499
Rhizophoraceae	Rhizophora apiculata	9	nbisL1-mrna-19269, nbisL1-mrna-19526, nbisL1-mrna-21163 ... nbisL1-mrna-21715, nbisL1-mrna-21716, nbisL1-mrna-21722, nbisL1-mrna-21723, nbisL1-mrna-21730, nbisL1-mrna-21731
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-15970, nbisL1-mrna-17160, nbisL1-mrna-17620 ... nbisL1-mrna-1963
Salicaceae	Populus euphratica	3	populus_peu34763, populus_peu36243, populus_peu36244
Solanaceae	Lycium barbarum	4	gene-LOC132608931, gene-LOC132610047, gene-LOC132615896 ... gene-LOC132626243
Solanaceae	Solanum chilense	1	SOLCI001747800
Solanaceae	Solanum pennellii	1	gene-LOC107029350
Tamaricaceae	Reaumuria soongarica	2	STRG.30154_chr10_-, gene_11960
Tamaricaceae	Tamarix chinensis	1	TC04G0569