Basic Information
Locus ID:
AgUnG00502
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
atilp1,ilp1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg340 | 42774 | 48473 | - | AgUnG00502 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 97,638.16 Da | 48.59 | 69.11 | -0.46 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17210.1 | IAP-like protein 1. | 0 |
| RefSeq | XP_028119103.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC114316605 [Camellia sinensis] | 0 |
| TrEMBL | A0A6L5BAH2 | C3HC-type domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_022262 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.599936 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.285728 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.379698 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.506313 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.990884 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.813898 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.084902 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.29092 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 32.896111 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.564236 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 32.887344 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 29.553654 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.767267 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.225391 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 29.996307 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 32.095531 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.193726 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.583796 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 23.008442 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.686352 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.673197 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.01468 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.87807 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.245832 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.07665 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.337265 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 14.528725 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.84762 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.395628 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.079685 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.069208 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.390485 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.12115 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.441016 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.684828 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.273051 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.93539 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.644781 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.603844 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 16.930933 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.061066 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.824523 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 17.570063 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.708557 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.833237 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.629037 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 27.203129 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.124473 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.909398 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.473576 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24308 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12695 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007438 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18973, Sbi_jg37425 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5266 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015183 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl22430, Sgl22431, Sgl27580, Sgl27581, Sgl27582 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008412, gene:ENSEOMG00000030998 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0015990, CQ.Regalona.r1.4BG0016300 |
| Apiaceae | Apium graveolens | 3 | Ag2G00061, AgUnG00502, AgUnG01240 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G020120, scaffold004540G000020 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103710517, gene-LOC103723898, gene-LOC120104082 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1860.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G21791, Ftri7G15384 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G17210.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006705m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g15350.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g031660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0178 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0259 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g04510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g18830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4682 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.46 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008394 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23229 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.128, AH03.231, BH03.297, BH03.3867, CH01.484, CH03.366 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0213490, gene-QOZ80_3BG0258600 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0153250.1, HORVU.MOREX.r3.5HG0516650.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_042489, gene-QYE76_061353 |
| Poaceae | Oryza coarctata | 3 | Oco06G026270, Oco13G001460, Oco14G001570 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g57160.1, LOC_Os07g05610.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G058200, gene-BS78_02G034300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303531 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G003380, Chr04G006080, Chr12G035240, Chr12G035520 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G466100, Tel5E01G664500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG032980, gene_TRIDC2BG039290 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G251900.2, TraesCS2B02G271800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb059900_P003, Zm00001eb300000_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35784 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g343, Zma_g4732, Zma_g5976 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1150 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g31840, gene.Posoc10g05140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.927 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16691, nbisL1-mrna-16764 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10142 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17233 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.103 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012257 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8659 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9146 |
| Salicaceae | Populus euphratica | 2 | populus_peu08087, populus_peu22158 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617690 |
| Solanaceae | Solanum chilense | 1 | SOLCI002041400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025877 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.28605_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2056 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23630.v3.1 |