Basic Information
Locus ID:
AgUnG00483
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg3368 | 23782 | 24540 | + | AgUnG00483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.41 | 27,115.68 Da | 59.11 | 48.37 | -0.75 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06868.1 | 0 | |
| RefSeq | XP_017222696.1 | PREDICTED: uncharacterized protein DDB_G0271670-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5BA25 | DUF4005 domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_016229 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.696804 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.608568 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.716599 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.811083 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.469511 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.353687 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.354389 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.690832 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 52.624931 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 51.860783 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 59.040421 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 55.701836 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 43.214371 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 29.833466 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.860114 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.554125 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.939819 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.321233 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.896071 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.369375 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.980083 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.197871 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.329431 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.331022 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.740077 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.588733 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.256768 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.625328 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.231132 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.254402 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.790165 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.639467 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.167954 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.844125 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.608179 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.427748 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.402403 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.48088 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.672661 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.290482 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.985732 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.605779 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.374064 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.105034 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.586898 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.434011 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.682839 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 30.819513 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.719094 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.503976 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg11240, jg12407, jg28050, jg5665 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18798 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017933 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59929, Sbi_jg62876 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23982 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026074 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl03409, Sgl03416, Sgl08453, Sgl08537 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000032124, gene:ENSEOMG00000044565 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0004340, CQ.Regalona.r1.8BG0004660 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30234240 |
| Apiaceae | Apium graveolens | 4 | Ag5G02411, Ag9G01874, AgUnG00053, AgUnG00483 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G014560, scaffold001941G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703681 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.1411.V1.1, AsparagusV1_06.1187.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G06556, Ftri7G27629 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G06868.1, AT5G49100.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004314m.g.v1.0, Thhalv10021990m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g19450.v2.2, Sp3g05830.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g056900.2N, BniB02g070110.2N, BniB03g024340.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1125 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g03790, gene.Cymno07g10870 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g02970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1289 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022653, Pov_00026109 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.2006, BH07.1977, CH03.4294, CH09.1063 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0132570, gene-QOZ80_2BG0187960 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0165250.1.CDS1 |
| Poaceae | Oryza coarctata | 4 | Oco03G011400, Oco04G011800, Oco07G004980, Oco08G004970 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g32550.1, LOC_Os04g33260.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G149000, gene-BS78_06G081900 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G010760, Chr09G015410, Chr13G011330, Chr23G013950 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G518500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG042200, gene_TRIDC2BG045280 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G291400.1.cds1, TraesCS2B02G307900.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb084360_P001, Zm00001eb242460_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-18914, nbis-gene-20846, nbis-gene-37957 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g13605, Zma_g16397, Zma_g19631, Zma_g21208 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG08.28, evm.TU.LG10.1570, evm.TU.LG13.946 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g08200, gene.Posoc05g07040 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.593, evm.TU.Scaffold_6_RagTag.590 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-1372, nbisL1-mrna-16098, nbisL1-mrna-28174 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15882, nbisL1-mrna-17215 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-486, nbisL1-mrna-6302 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000011l.143, add.evm.TU.utg000019l.359 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007960, Maker00012753 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-21610, nbisL1-mrna-22284 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18192, nbisL1-mrna-3652 |
| Salicaceae | Populus euphratica | 3 | populus_peu08062, populus_peu22224, populus_peu22235 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132604519, gene-LOC132626782, gene-LOC132642212 |
| Solanaceae | Solanum chilense | 2 | SOLCI000183400, SOLCI005285900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005719, gene-LOC107009212 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.3570_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1649 |
| Zosteraceae | Zostera marina | 3 | Zosma03g15140.v3.1, Zosma04g02220.v3.1, Zosma05g08690.v3.1 |