halophFGD

Basic Information

Locus ID: AgUnG00471

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: transcription factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg3322	83480	84997	-	AgUnG00471

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.18	54,549.62 Da	52.95	80.94	-0.40

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00010	Helix-loop-helix DNA-binding domain	306	352	3.6E-10	IPR011598
Pfam	PF14215	bHLH-MYC and R2R3-MYB transcription factors N-terminal	24	212	1.8E-42	IPR025610
SUPERFAMILY	SSF47459	HLH, helix-loop-helix DNA-binding domain	306	368	2.88E-17	IPR036638
Gene3D	G3DSA:4.10.280.10	-	296	369	2.4E-16	IPR036638
SMART	SM00353	finulus	309	358	5.1E-16	IPR011598
ProSiteProfiles	PS50888	Myc-type, basic helix-loop-helix (bHLH) domain profile.	303	352	16.792974	IPR011598
MobiDBLite	mobidb-lite	consensus disorder prediction	245	260	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	274	289	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	242	292	-	-
Coils	Coil	Coil	349	369	-	-

Gene Ontology

Molecular Function:

GO:0046983 (protein dimerization activity)

KEGG Pathway

KO Term:

K13422 (transcription factor MYC2)

Pathway:

ko04016 (MAPK signaling pathway - plant) map04016 (MAPK signaling pathway - plant) ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G46760.1	Basic helix-loop-helix (bHLH) DNA-binding family protein.
RefSeq	XP_017232647.1	PREDICTED: transcription factor MYC2-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9FIP9	Transcription factor MYC3 OS=Arabidopsis thaliana OX=3702 GN=MYC3 PE=1 SV=1
TrEMBL	A0A6L5BEJ8	BHLH domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_007086 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.35665	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.284209	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.204143	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.116257	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.274457	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.327686	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.245493	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	26.786856	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	28.43376	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	30.092602	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	22.654985	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	8.602376	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	9.232965	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.129493	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.650295	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.408125	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.885866	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	3.397425	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.435502	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.504784	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	7.583098	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	15.756426	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	15.084469	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	10.731206	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	4.045288	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	4.043228	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.858277	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	5.373566	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.536275		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.215475		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.283221		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	7.330532		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.135034		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.233035		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	18.072632		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	58.07576		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	37.888248		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	19.641289	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.28434	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.746834	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.057951	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.041442	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.13921	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.041308	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.149823	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.440599	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	3.53483	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.942644	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg26945, jg29495, jg37348, jg37408, jg4953
Aizoaceae	Mesembryanthemum crystallinum	5	gene_14879, gene_14880, gene_1605, gene_1728, gene_2111
Amaranthaceae	Atriplex hortensis	4	Ah003986, Ah003987, Ah004273, Ah022794
Amaranthaceae	Beta vulgaris	3	BVRB_1g002400, BVRB_5g104050, BVRB_5g105880
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg24139, Sbi_jg24505, Sbi_jg3854, Sbi_jg49089 ... Sbi_jg7975, Sbi_jg8352
Amaranthaceae	Salicornia europaea	3	Seu_jg11694, Seu_jg12061, Seu_jg6150
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000643, GOSA_00001689, GOSA_00010732
Amaranthaceae	Suaeda glauca	8	Sgl10839, Sgl16193, Sgl51317, Sgl52341, Sgl56690, Sgl57633 ... Sgl63820, Sgl68318
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000004877, gene:ENSEOMG00000006810 ... gene:ENSEOMG00000015300, gene:ENSEOMG00000022576, gene:ENSEOMG00000022956, gene:ENSEOMG00000024963, gene:ENSEOMG00000026017, gene:ENSEOMG00000036564, gene:ENSEOMG00000046504
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0003980, CQ.Regalona.r1.2BG0026790 ... CQ.Regalona.r1.5AG0002380, CQ.Regalona.r1.5AG0004890, CQ.Regalona.r1.5AG0004900, CQ.Regalona.r1.5BG0002550, CQ.Regalona.r1.5BG0005280, CQ.Regalona.r1.5BG0005290
Anacardiaceae	Pistacia vera	2	pistato.v30006370, pistato.v30133340
Apiaceae	Apium graveolens	6	Ag11G03856, Ag5G01278, Ag6G00790, Ag6G01532, AgUnG00471 ... AgUnG00473
Arecaceae	Cocos nucifera	8	COCNU_07G003710, COCNU_07G007610, COCNU_08G008340 ... COCNU_09G003690, COCNU_10G002520, COCNU_10G005790, scaffold002848G000030, scaffold019947G000030
Arecaceae	Phoenix dactylifera	8	gene-LOC103699800, gene-LOC103704709, gene-LOC103706364 ... gene-LOC103711767, gene-LOC103714042, gene-LOC103716907, gene-LOC103721582, gene-LOC120104403
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.1658.V1.1
Asteraceae	Flaveria trinervia	7	Ftri13G01355, Ftri14G16593, Ftri14G19656, Ftri15G06271 ... Ftri16G25944, Ftri3G16256, Ftri3G31050
Brassicaceae	Arabidopsis thaliana	5	AT1G32640.1, AT4G00870.1, AT4G17880.1, AT5G46760.1 ... AT5G46830.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10000808m.g.v1.0, Thhalv10000853m.g.v1.0 ... Thhalv10007075m.g.v1.0, Thhalv10024688m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g28280.v2.2, Sp2g11570.v2.2, Sp2g11630.v2.2 ... Sp7g16240.v2.2, SpUn0036_0040.v2.2
Brassicaceae	Brassica nigra	9	BniB02g063410.2N, BniB02g063470.2N, BniB03g016310.2N ... BniB03g035750.2N, BniB04g015470.2N, BniB04g015480.2N, BniB04g015560.2N, BniB04g049150.2N, BniB05g018490.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G0341, Ceq03G0649, Ceq04G1277
Casuarinaceae	Casuarina glauca	3	Cgl01G0344, Cgl03G0741, Cgl04G1437
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno03g05080, gene.Cymno18g05700
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g07070, gene.Thate05g11720, gene.Thate07g02230 ... gene.Thate09g04890
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-11371, nbisL1-mrna-11624, nbisL1-mrna-1523 ... nbisL1-mrna-2864, nbisL1-mrna-6175
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.637, evm.TU.LG05.769, evm.TU.LG10.1612
Plantaginaceae	Plantago ovata	2	Pov_00002988, Pov_00010120
Plumbaginaceae	Limonium bicolor	2	Lb3G20359, Lb4G25366
Poaceae	Echinochloa crus-galli	1	BH01.3129
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_2AG0117910, gene-QOZ80_2BG0171500
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0053170.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_012868
Poaceae	Oryza coarctata	2	Oco19G010950, Oco20G010780
Poaceae	Oryza sativa	1	LOC_Os10g42430.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G275700
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0503378
Poaceae	Sporobolus alterniflorus	5	Chr06G026990, Chr09G005980, Chr13G018900, Chr15G018080 ... Chr16G006410
Poaceae	Thinopyrum elongatum	1	Tel1E01G336100
Poaceae	Triticum dicoccoides	2	gene_TRIDC1AG029280, gene_TRIDC1BG034740
Poaceae	Triticum aestivum	3	TraesCS1A02G193200.1, TraesCS1B02G208000.1.cds1 ... TraesCS1D02G196900.1.cds1
Poaceae	Zea mays	2	Zm00001eb024330_P001, Zm00001eb390330_P002
Poaceae	Zoysia japonica	4	nbis-gene-38139, nbis-gene-39267, nbis-gene-39268 ... nbis-gene-50833
Poaceae	Zoysia macrostachya	2	Zma_g12982, Zma_g15749
Portulacaceae	Portulaca oleracea	7	evm.TU.LG04.2103, evm.TU.LG04.3043, evm.TU.LG06.212 ... evm.TU.LG10.719, evm.TU.LG16.563, evm.TU.LG17.727, evm.TU.LG18.554
Posidoniaceae	Posidonia oceanica	10	gene.Posoc02g11860, gene.Posoc02g11870, gene.Posoc02g11880 ... gene.Posoc02g11890, gene.Posoc02g11900, gene.Posoc06g06230, gene.Posoc06g06240, gene.Posoc07g00580, gene.Posoc09g00200, gene.Posoc09g11880
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_14_RagTag.524, evm.TU.Scaffold_16_RagTag.31 ... evm.TU.Scaffold_16_RagTag.481, evm.TU.Scaffold_5_RagTag.666, evm.TU.Scaffold_9_RagTag.640
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-10687, nbisL1-mrna-17829, nbisL1-mrna-21579 ... nbisL1-mrna-22228, nbisL1-mrna-22279, nbisL1-mrna-22751
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-12452, nbisL1-mrna-17724, nbisL1-mrna-19166 ... nbisL1-mrna-19334, nbisL1-mrna-7563
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-11310, nbisL1-mrna-20447, nbisL1-mrna-22120 ... nbisL1-mrna-7438, nbisL1-mrna-8224
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000003l.56, add.evm.TU.utg000006l.253 ... add.evm.TU.utg000007l.46, add.evm.TU.utg000022l.125, add.evm.TU.utg000022l.263
Rhizophoraceae	Kandelia obovata	4	Maker00013833, Maker00014502, Maker00017793, Maker00018698
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-17390, nbisL1-mrna-18061, nbisL1-mrna-18196 ... nbisL1-mrna-20777, nbisL1-mrna-23320
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-10588, nbisL1-mrna-5401, nbisL1-mrna-6414 ... nbisL1-mrna-6813, nbisL1-mrna-7306
Salicaceae	Populus euphratica	7	populus_peu03170, populus_peu03180, populus_peu03765 ... populus_peu27509, populus_peu31499, populus_peu34033, populus_peu34609
Solanaceae	Lycium barbarum	9	gene-LOC132608789, gene-LOC132609732, gene-LOC132612332 ... gene-LOC132612333, gene-LOC132629441, gene-LOC132632127, gene-LOC132635286, gene-LOC132638036, gene-LOC132645386
Solanaceae	Solanum chilense	6	SOLCI002550900, SOLCI004214400, SOLCI004352900 ... SOLCI004353300, SOLCI005417600, SOLCI006410300
Solanaceae	Solanum pennellii	6	gene-LOC107027416, gene-LOC107027900, gene-LOC107028709 ... gene-LOC107028843, gene-LOC107032486, gene-LOC107032494
Tamaricaceae	Reaumuria soongarica	4	STRG.16171_chr06_+, STRG.23740_chr05_+, gene_15183 ... gene_15185
Tamaricaceae	Tamarix chinensis	3	TC01G2850, TC09G0463, TC09G2388
Zosteraceae	Zostera marina	7	Zosma02g02890.v3.1, Zosma03g22170.v3.1, Zosma05g01080.v3.1 ... Zosma05g10360.v3.1, Zosma05g19450.v3.1, Zosma05g25300.v3.1, Zosma06g01420.v3.1