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Basic Information
Locus ID: AgUnG00467
Species & Taxonomic ID: Apium graveolens & 4045
Genome Assembly: GCA_009905375.1
Short Name: GLT1
Description: glutamate synthase
Maps and Mapping Data
Chromosome Start End Strand ID
ctg3274 61487 73522 - AgUnG00467
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.90 184,879.67 Da 36.66 83.94 -0.31
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00982 gltB_C 863 1112 4.6971E-151 IPR002489
CDD cd02808 GltS_FMN 436 815 6.53797E-170 IPR002932
Pfam PF01645 Conserved region in glutamate synthase 434 802 5.8E-153 IPR002932
Pfam PF01493 GXGXG motif 886 1072 6.9E-86 IPR002489
Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 1208 1319 8.8E-22 IPR028261
Pfam PF00310 Glutamine amidotransferases class-II 113 208 5.0E-32 IPR017932
Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1332 1658 1.5E-25 IPR023753
Pfam PF04898 Glutamate synthase central domain 237 367 2.4E-46 IPR006982
SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 113 208 1.2E-27 IPR029055
SUPERFAMILY SSF51971 Nucleotide-binding domain 1330 1603 1.53E-61 -
SUPERFAMILY SSF69336 Alpha subunit of glutamate synthase, C-terminal domain 855 1118 3.53E-99 IPR036485
SUPERFAMILY SSF51395 FMN-linked oxidoreductases 237 837 2.38E-189 -
SUPERFAMILY SSF46548 alpha-helical ferredoxin 1185 1341 7.32E-36 -
Gene3D G3DSA:3.20.20.70 Aldolase class I 425 842 2.9E-191 IPR013785
Gene3D G3DSA:3.40.50.720 - 1332 1440 7.4E-15 -
Gene3D G3DSA:2.160.20.60 - 843 1115 3.3E-111 IPR036485
Gene3D G3DSA:3.50.50.60 - 1441 1602 6.9E-33 IPR036188
Gene3D G3DSA:3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 113 211 2.2E-37 IPR029055
Gene3D G3DSA:1.10.1060.10 - 1116 1331 2.3E-39 IPR009051
Gene3D G3DSA:3.20.20.70 Aldolase class I 227 423 1.2E-61 IPR013785
TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 1187 1672 8.9E-227 IPR006005
ProSiteProfiles PS51278 Glutamine amidotransferase type 2 domain profile. 113 1695 10.801886 IPR017932
PRINTS PR00419 Adrenodoxin reductase family signature 1333 1355 1.1E-23 -
PRINTS PR00419 Adrenodoxin reductase family signature 1399 1409 1.1E-23 -
PRINTS PR00419 Adrenodoxin reductase family signature 1356 1369 1.1E-23 -
PRINTS PR00419 Adrenodoxin reductase family signature 1477 1491 1.1E-23 -
MobiDBLite mobidb-lite consensus disorder prediction 1675 1695 - -
MobiDBLite mobidb-lite consensus disorder prediction 526 546 - -
Coils Coil Coil 1120 1155 - -
Gene Ontology
Biological Process:
GO:0006537 (glutamate biosynthetic process) GO:0008152 (metabolic process)
Molecular Function:
GO:0003824 (catalytic activity) GO:0015930 (glutamate synthase activity) GO:0016491 (oxidoreductase activity) GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors) GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor) GO:0051536 (iron-sulfur cluster binding)
KEGG Pathway
KO Term:
K00264 (glutamate synthase (NADH) [EC:1.4.1.14])
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism) map00250 (Alanine, aspartate and glutamate metabolism) ko00910 (Nitrogen metabolism) map00910 (Nitrogen metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)
Reaction:
R00093 (2 L-Glutamate + NAD+ <=> L-Glutamine + 2-Oxoglutarate + NADH + H+) R00114 (2 L-Glutamate + NADP+ <=> L-Glutamine + 2-Oxoglutarate + NADPH + H+) R00248 (L-Glutamate + NADP+ + H2O <=> 2-Oxoglutarate + Ammonia + NADPH + H+)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G53460.1 NADH-dependent glutamate synthase 1. NADH-dependent glutamate synthase 0
RefSeq XP_017242004.1 PREDICTED: glutamate synthase 1 [NADH], chloroplastic-like isoform X1 [Daucus carota subsp. sativus] 0
Swiss-Prot Q03460 Glutamate synthase [NADH], amyloplastic OS=Medicago sativa OX=3879 PE=1 SV=1 0
TrEMBL A0A6L5B9W7 glutamate synthase (NADH) OS=Apium graveolens OX=4045 GN=AG4045_012301 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
PRJNA723697SRX1069225222.234097Shengqin NO.2seedS1-1S1-1initial formation stage (S1)
PRJNA723697SRX1069225415.883152Shengqin NO.2seedS1-3S1-3initial formation stage (S1)
PRJNA723697SRX1069225515.786061Shengqin NO.2seedS3-1S3-1middle development stage (S3)
PRJNA723697SRX1069225616.368561Shengqin NO.2seedS3-2S3-2middle development stage (S3)
PRJNA723697SRX1069225718.607082Shengqin NO.2seedS3-3S3-3middle development stage (S3)
PRJNA723697SRX1069225819.523449Shengqin NO.2seedS5-1S5-1maturation stage (S5)
PRJNA723697SRX1069225921.352116Shengqin NO.2seedS5-2S5-2maturation stage (S5)
PRJNA723697SRX1069226021.122486Shengqin NO.2seedS5-3S5-3maturation stage (S5)
PRJNA884666SRX1772927210.510274celeryantherW99A-r1male sterile line 
PRJNA884666SRX1772927311.060678celeryantherW99A-r2male sterile line 
PRJNA884666SRX1772927411.277921celeryantherW99A-r3male sterile line 
PRJNA884666SRX1772927511.038294celeryantherW99B-r1maintainer line
PRJNA884666SRX1772927617.362576celeryantherW99B-r2maintainer line
PRJNA884666SRX1772927712.903169celeryantherW99B-r3maintainer line
PRJNA884180SRX177438890.442872var. secalinum YablochnycollenchymaCol_S1_rep1-1
PRJNA884180SRX177480560.569753var. secalinum YablochnycollenchymaCol_S1_rep3biological replicate 3
PRJNA884180SRX177480570.181332var. secalinum YablochnycollenchymaCol_S1_rep4biological replicate 4
PRJNA884180SRX177486780.385652var. secalinum YablochnyparenchymaPar_S1_rep1Biological replicate 1
PRJNA884180SRX177486790.632321var. secalinum YablochnyparenchymaPar_S1_rep2Biological replicate 2
PRJNA884180SRX177486802.465511var. secalinum YablochnyparenchymaPar_S1_rep3Biological replicate 3
PRJNA884180SRX177486810.627629var. secalinum YablochnyparenchymaPar_S1_rep4Biological replicate 4
PRJNA884180SRX177488981.619614var. secalinum Yablochnyvascular bundleVas_S1_rep1Biological replicate 1
PRJNA884180SRX177488991.711347var. secalinum Yablochnyvascular bundleVas_S1_rep2Biological replicate 2
PRJNA884180SRX177489001.219305var. secalinum Yablochnyvascular bundleVas_S1_rep3Biological replicate 3
PRJNA884180SRX177489011.51255var. secalinum Yablochnyvascular bundleVas_S1_rep4Biological replicate 4
PRJNA884180SRX177491291.092324var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep1Biological replicate 1
PRJNA884180SRX177491300.902425var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep2Biological replicate 2
PRJNA884180SRX177491311.117211var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep3Biological replicate 3
PRJNA884180SRX177491321.143004var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep4Biological replicate 4
PRJNA1124269SRX249364110.394881leafCK1replicate=biological replicate1
PRJNA1124269SRX249364120.705856leafCK2replicate=biological replicate2
PRJNA1124269SRX249364130.554309leafCK3replicate=biological replicate3
PRJNA1124269SRX249364146.831636leafD1replicate=biological replicate1
PRJNA1124269SRX249364154.75172leafD2replicate=biological replicate2
PRJNA1124269SRX249364167.034989leafD3replicate=biological replicate3
PRJNA1124269SRX249364171.729342leafMD1replicate=biological replicate1
PRJNA1124269SRX249364181.142032leafMD2replicate=biological replicate2
PRJNA1124269SRX249364191.143997leafMD3replicate=biological replicate3
PRJNA387092SRX28333092.113853shanghaihuangxinleafleaves between 0.5 and 1 cm in breadth, folded;stage 2
PRJNA387092SRX28333212.36802shanghaihuangxinleafleaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sionstage 5
PRJNA387092SRX28333230.703644shanghaihuangxinleafleaves >3 cm, unfolded, with clearstem extensionstage 7
PRJNA543957SRX58795988.472112Zhangzhou lvqingstemSe3100 ppm Na2SeO4
PRJNA543957SRX587959941.940197Zhangzhou lvqingstemSe2100 ppm Na2SeO4
PRJNA543957SRX58796003.091356Zhangzhou lvqingstemMock2mock
PRJNA543957SRX58796017.733282Zhangzhou lvqingstemMock1mock
PRJNA543957SRX58796024.107116Zhangzhou lvqingstemSe1100 ppm Na2SeO4
PRJNA543957SRX58796034.123951Zhangzhou lvqingstemMock3mock
PRJNA609149SRX78159177.553054Jinnan Shiqinflower budearly flower budearly flower bud
PRJNA609149SRX78159186.004017Jinnan Shiqinflower budmiddle flower budmiddle flower bud
PRJNA609149SRX78159195.036424Jinnan Shiqinflower budearly flowering periodearly flowering period
Network
🔍 Co-expression Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg13893, jg2196
Aizoaceae Mesembryanthemum crystallinum 1 gene_3295
Amaranthaceae Atriplex hortensis 1 Ah018647
Amaranthaceae Beta vulgaris 1 BVRB_3g052140
Amaranthaceae Salicornia bigelovii 2 Sbi_jg15107, Sbi_jg55939
Amaranthaceae Salicornia europaea 1 Seu_jg26420
Amaranthaceae Suaeda aralocaspica 1 GOSA_00020044
Amaranthaceae Suaeda glauca 5 Sgl01374, Sgl01440, Sgl01441, Sgl06449, Sgl06528
Amaranthaceae Chenopodium album 3 gene:ENSEOMG00000000510, gene:ENSEOMG00000031859 ...
gene:ENSEOMG00000043885
Amaranthaceae Chenopodium quinoa 2 CQ.Regalona.r1.3AG0004880, CQ.Regalona.r1.3BG0004920
Anacardiaceae Pistacia vera 1 pistato.v30185180
Apiaceae Apium graveolens 2 Ag10G02525, AgUnG00467
Arecaceae Cocos nucifera 2 COCNU_03G013130, scaffold000561G000020
Arecaceae Phoenix dactylifera 2 gene-LOC103708325, gene-LOC103713334
Asparagaceae Asparagus officinalis 1 AsparagusV1_05.2833.V1.1
Asteraceae Flaveria trinervia 1 Ftri18G12439
Brassicaceae Arabidopsis thaliana 1 AT5G53460.1
Brassicaceae Eutrema salsugineum 1 Thhalv10012414m.g.v1.0
Brassicaceae Schrenkiella parvula 1 Sp6g15593.v2.2
Brassicaceae Brassica nigra 1 BniB08g016600.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq09G1606
Casuarinaceae Casuarina glauca 1 Cgl09G1742
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno02g12650, gene.Cymno12g01560
Dunaliellaceae Dunaliella salina 1 Dusal.0052s00003.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate03g24920, gene.Thate09g14990
Nitrariaceae Nitraria sibirica 1 evm.TU.LG01.2897
Plantaginaceae Plantago ovata 1 Pov_00041146
Plumbaginaceae Limonium bicolor 2 Lb0G37740, Lb7G32942
Poaceae Echinochloa crus-galli 5 AH02.2769, AH05.1457, BH02.2852, BH05.1626, CH02.3687
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0028780, gene-QOZ80_1BG0079010 ...
gene-QOZ80_5AG0363860, gene-QOZ80_5BG0411960
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0280530.1
Poaceae Lolium multiflorum 2 gene-QYE76_054594, gene-QYE76_054602
Poaceae Oryza coarctata 4 Oco01G017400, Oco02G017650, Oco09G016320, Oco10G016130
Poaceae Oryza sativa 2 LOC_Os01g48960.1, LOC_Os05g48200.1
Poaceae Paspalum vaginatum 3 gene-BS78_03G233100, gene-BS78_03G236800 ...
gene-BS78_09G229900
Poaceae Puccinellia tenuiflora 1 Pt_Chr0602367
Poaceae Sporobolus alterniflorus 3 Chr02G012560, Chr03G013590, Chr08G013750
Poaceae Thinopyrum elongatum 1 Tel3E01G442300
Poaceae Triticum dicoccoides 2 gene_TRIDC3AG039670, gene_TRIDC3BG044820
Poaceae Triticum aestivum 3 TraesCS3A02G266300.1, TraesCS3B02G299800.1 ...
TraesCS3D02G266400.1
Poaceae Zea mays 3 Zm00001eb156610_P002, Zm00001eb295220_P001 ...
Zm00001eb360480_P005
Poaceae Zoysia japonica 2 nbis-gene-12580, nbis-gene-26118
Poaceae Zoysia macrostachya 2 Zma_g10886, Zma_g8437
Portulacaceae Portulaca oleracea 1 evm.TU.LG06.1967
Posidoniaceae Posidonia oceanica 2 gene.Posoc08g13790, gene.Posoc09g09130
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_1_RagTag.622, evm.TU.Scaffold_2_RagTag.1648
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-3559, nbisL1-mrna-7507
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-2555, nbisL1-mrna-921
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14013, nbisL1-mrna-5641
Rhizophoraceae Kandelia candel 2 evm.TU.utg000009l.314, evm.TU.utg000012l.386
Rhizophoraceae Kandelia obovata 2 Maker00005974, Maker00011451
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-2744, nbisL1-mrna-8412
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-16769, nbisL1-mrna-743
Salicaceae Populus euphratica 3 populus_peu28067, populus_peu29502, populus_peu29503
Solanaceae Lycium barbarum 1 gene-LOC132632063
Solanaceae Solanum pennellii 1 gene-LOC107013700
Tamaricaceae Reaumuria soongarica 1 gene_5260
Tamaricaceae Tamarix chinensis 1 TC06G1506
Zosteraceae Zostera marina 2 Zosma01g06270.v3.1, Zosma01g22390.v3.1
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