halophFGD

Basic Information

Locus ID: AgUnG00436

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ctg3113	22475	26283	+	AgUnG00436

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.83	121,396.56 Da	35.58	95.45	0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	857	1125	8.71168E-90	-
Pfam	PF00560	Leucine Rich Repeat	253	275	1.4	IPR001611
Pfam	PF00560	Leucine Rich Repeat	180	202	0.77	IPR001611
Pfam	PF00560	Leucine Rich Repeat	156	178	0.43	IPR001611
Pfam	PF13855	Leucine rich repeat	637	697	1.0E-6	IPR001611
Pfam	PF08263	Leucine rich repeat N-terminal domain	33	73	5.7E-13	IPR013210
Pfam	PF00560	Leucine Rich Repeat	301	323	1.2	IPR001611
Pfam	PF00069	Protein kinase domain	854	1052	3.1E-43	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	835	1122	8.5E-74	IPR011009
SUPERFAMILY	SSF52058	L domain-like	34	334	2.75E-59	-
SUPERFAMILY	SSF52058	L domain-like	355	752	6.46E-44	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	250	340	6.4E-23	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	496	758	7.6E-50	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	927	1128	5.8E-57	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	349	495	8.2E-23	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	816	926	5.0E-27	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	111	249	5.1E-40	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	30	102	6.2E-9	IPR032675
SMART	SM00220	serkin_6	851	1128	2.2E-33	IPR000719
SMART	SM00369	LRR_typ_2	612	635	42.0	IPR003591
SMART	SM00369	LRR_typ_2	660	683	330.0	IPR003591
SMART	SM00369	LRR_typ_2	154	177	82.0	IPR003591
SMART	SM00369	LRR_typ_2	684	707	38.0	IPR003591
SMART	SM00369	LRR_typ_2	178	202	8.2	IPR003591
SMART	SM00369	LRR_typ_2	299	323	7.1	IPR003591
SMART	SM00369	LRR_typ_2	226	250	410.0	IPR003591
ProSiteProfiles	PS50011	Protein kinase domain profile.	851	1129	39.113739	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	971	983	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	857	879	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	757	776	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G02130.2	-
RefSeq	XP_017217573.1	PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Daucus carota subsp. sativus]
Swiss-Prot	Q9S7I6	LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1
TrEMBL	A0A6L5BA62	Protein kinase domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_001716 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.040802	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.256102	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	7.176442	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	6.647923	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	7.136406	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	9.551375	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	3.580946	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.59537	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	3.808463	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	3.975443	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.608413	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	3.144252	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.490278	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.129611	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	3.082003	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.297676	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	3.96965	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	7.612062	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	5.438631	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	9.152613	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	7.242208	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	3.637632	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	7.82923	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	5.413675	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	6.579692	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.933411	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	8.255595	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	4.423087	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	6.986503	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.592731		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.927267		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.648699		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	7.082386		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.274909		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	6.080205		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.858689		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.566112		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.765623		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.688384	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.248305	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.711344	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.580697	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.823668	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.690259	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.389558	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.484053	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.770626	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.319298	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.333491	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	2.145721	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg17584, jg19759, jg34828, jg40197, jg9258, jg9259
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24968, gene_3855
Amaranthaceae	Atriplex hortensis	2	Ah012593, Ah026410
Amaranthaceae	Beta vulgaris	2	BVRB_6g136390, BVRB_6g151740
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg14050, Sbi_jg44767, Sbi_jg51916
Amaranthaceae	Salicornia europaea	2	Seu_jg27319, Seu_jg9956
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002198, GOSA_00025368, GOSA_00025370
Amaranthaceae	Suaeda glauca	4	Sgl31778, Sgl34868, Sgl37063, Sgl40265
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000002026, gene:ENSEOMG00000002358 ... gene:ENSEOMG00000002669, gene:ENSEOMG00000004011, gene:ENSEOMG00000025335, gene:ENSEOMG00000025959
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.6AG0008900, CQ.Regalona.r1.6AG0017060 ... CQ.Regalona.r1.6BG0009690
Anacardiaceae	Pistacia vera	4	pistato.v30006980, pistato.v30021520, pistato.v30193170 ... pistato.v30226860
Apiaceae	Apium graveolens	5	Ag1G01497, Ag6G00444, Ag7G01428, AgUnG00323, AgUnG00436
Arecaceae	Cocos nucifera	4	COCNU_06G016170, COCNU_13G005540, COCNU_14G011170 ... COCNU_15G005900
Arecaceae	Phoenix dactylifera	4	gene-LOC103704476, gene-LOC103708261, gene-LOC103712388 ... gene-LOC103718209
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.1467.V1.1, AsparagusV1_03.2008.V1.1 ... AsparagusV1_03.2591.V1.1
Asteraceae	Flaveria trinervia	3	Ftri13G24020, Ftri18G17288, Ftri9G23079
Brassicaceae	Arabidopsis thaliana	2	AT1G69270.1, AT3G02130.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10018335m.g.v1.0, Thhalv10019938m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g01200.v2.2, Sp5g24330.v2.2
Brassicaceae	Brassica nigra	4	BniB03g046620.2N, BniB05g066220.2N, BniB07g034840.2N ... BniB07g061470.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq07G1157, Ceq08G0015, Ceq08G0438
Casuarinaceae	Casuarina glauca	3	Cgl07G1214, Cgl08G0014, Cgl08G0391
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno10g06900, gene.Cymno10g06910, gene.Cymno14g08910 ... gene.Cymno14g08920
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g29620, gene.Thate08g13590
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2200
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.401, evm.TU.LG04.572, evm.TU.LG05.43
Plantaginaceae	Plantago ovata	5	Pov_00008182, Pov_00008184, Pov_00008587, Pov_00025960 ... Pov_00028072
Plumbaginaceae	Limonium bicolor	2	Lb4G22327, Lb6G32585
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0006240, gene-QOZ80_1BG0054960 ... gene-QOZ80_7AG0551900, gene-QOZ80_7AG0575930, gene-QOZ80_7BG0582980, gene-QOZ80_7BG0607390
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0126860.1.CDS1 ... HORVU.MOREX.r3.2HG0156970.1.CDS1, HORVU.MOREX.r3.3HG0231730.1.CDS1, HORVU.MOREX.r3.5HG0511490.1.CDS1
Poaceae	Lolium multiflorum	4	gene-QYE76_039872, gene-QYE76_043153, gene-QYE76_053321 ... gene-QYE76_061772
Poaceae	Oryza coarctata	5	Oco02G000190, Oco05G023970, Oco06G024850, Oco13G011990 ... Oco14G012750
Poaceae	Oryza sativa	2	LOC_Os03g54900.1, LOC_Os07g41140.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G076300, gene-BS78_02G007300 ... gene-BS78_02G341600, gene-BS78_03G096200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0303329, Pt_Chr0303338, Pt_Chr0603033
Poaceae	Sporobolus alterniflorus	12	Chr01G004900, Chr03G002570, Chr04G028880, Chr07G027880 ... Chr0G018720, Chr12G037350, Chr19G002730, Chr19G018830, Chr24G002400, Chr27G014540, Chr28G000390, Chr28G011120
Poaceae	Thinopyrum elongatum	4	Tel2E01G341700, Tel2E01G479300, Tel3E01G146900 ... Tel5E01G625000
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG022530, gene_TRIDC2AG036940 ... gene_TRIDC2BG026400, gene_TRIDC2BG040830, gene_TRIDC3AG009720, gene_TRIDC3BG013410, gene_TRIDC5AG057170, gene_TRIDC5BG061340
Poaceae	Triticum aestivum	11	TraesCS2A02G176500.1.cds1, TraesCS2A02G260600.1.cds1 ... TraesCS2B02G202900.1.cds1, TraesCS2B02G281400.1, TraesCS2D02G183900.1, TraesCS2D02G263100.1.cds1, TraesCS3B02G096000.1.cds1, TraesCS3D02G081000.1.cds1, TraesCS5A02G393000.1.cds1, TraesCS5B02G397900.1.cds1, TraesCS5D02G402900.1.cds1
Poaceae	Zea mays	3	Zm00001eb214630_P001, Zm00001eb298670_P001 ... Zm00001eb326880_P001
Poaceae	Zoysia japonica	5	nbis-gene-16206, nbis-gene-32366, nbis-gene-32367 ... nbis-gene-50440, nbis-gene-56236
Poaceae	Zoysia macrostachya	3	Zma_g2764, Zma_g5897, Zma_g7454
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.2222, evm.TU.LG13.500, evm.TU.LG17.1277 ... evm.TU.LG21.194
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g14630, gene.Posoc06g19760
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.248, evm.TU.Scaffold_3_RagTag.1708 ... evm.TU.Scaffold_6_RagTag.343
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-14174, nbisL1-mrna-1932, nbisL1-mrna-2019 ... nbisL1-mrna-2078, nbisL1-mrna-2160
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10595, nbisL1-mrna-11952, nbisL1-mrna-9238
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-14319, nbisL1-mrna-2901, nbisL1-mrna-306
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000005l.97, add.evm.TU.utg000011l.94 ... add.evm.TU.utg000019l.89
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16918, nbisL1-mrna-21422, nbisL1-mrna-21602
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-17244, nbisL1-mrna-18217, nbisL1-mrna-18218 ... nbisL1-mrna-18966
Salicaceae	Populus euphratica	5	populus_peu06809, populus_peu09334, populus_peu09335 ... populus_peu25142, populus_peu27104
Solanaceae	Lycium barbarum	2	gene-LOC132615815, gene-LOC132618905
Solanaceae	Solanum chilense	2	SOLCI000455700, SOLCI000565900
Solanaceae	Solanum pennellii	2	gene-LOC107014790, gene-LOC107016390
Tamaricaceae	Reaumuria soongarica	1	STRG.3614_chr02_-
Zosteraceae	Zostera marina	1	Zosma03g29840.v3.1