Basic Information
Locus ID:
AgUnG00421
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ctg3017 | 80979 | 89509 | - | AgUnG00421 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 43,910.07 Da | 54.17 | 86.83 | -0.14 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04460.1 | peroxin-12. RING finger protein involved in peroxisome biogenesis. Also involved in peroxisomal import of nitric oxide synthase. | 0 |
| RefSeq | XP_017259081.1 | PREDICTED: peroxisome biogenesis protein 12 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9M841 | Peroxisome biogenesis protein 12 OS=Arabidopsis thaliana OX=3702 GN=PEX12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6L5BA06 | Peroxisome biogenesis protein 12 OS=Apium graveolens OX=4045 GN=AG4045_021935 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 33.75148 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 27.484507 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 32.371078 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 27.647438 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 29.635145 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 48.187717 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 31.476328 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 33.419636 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 44.235138 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 49.999668 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 51.912941 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 51.914108 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 41.857468 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 40.368214 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.683393 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 15.643546 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.138487 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 23.269718 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 24.957191 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.842058 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.865808 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 26.559582 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 26.088684 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 23.848738 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.594402 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 24.431782 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.883125 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 25.635351 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 25.208244 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 64.345062 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 43.7658 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 44.231625 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 70.847237 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 49.71785 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 58.163834 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 74.832634 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 92.221252 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 87.7211 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 53.493526 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 23.777428 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 25.105461 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 31.774551 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 49.449459 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 91.057045 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 89.956955 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 32.02158 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 59.507195 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 44.345505 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 55.113712 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 47.028061 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9902 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9930 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006390 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g084020 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16568, Sbi_jg61084 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22837 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008114, GOSA_00008115 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24970, Sgl30118 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010512, gene:ENSEOMG00000028287 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0011740 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30090920, pistato.v30091300 |
| Apiaceae | Apium graveolens | 1 | AgUnG00421 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G001210, COCNU_10G000900 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703898, gene-LOC120107870 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1901.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G10588 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G04460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020878m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g03310.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g033710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1656 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1715 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g04260 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0098s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g06900 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2185 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040086 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G21775 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1816, BH01.2146, CH01.2224 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127390, gene-QOZ80_2BG0182870 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0041250.1 |
| Poaceae | Oryza coarctata | 2 | Oco19G005750, Oco20G005630 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g32960.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G210400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502544 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G010670, Chr0G026010, Chr13G014500 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G277400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG022710, gene_TRIDC1BG027580 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G149100.1, TraesCS1B02G167000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb046420_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21205 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13361 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1317, evm.TU.LG20.1314 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g01550 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1894 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3296 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3172 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13821 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.158 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005012 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12880 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16298 |
| Salicaceae | Populus euphratica | 2 | populus_peu15989, populus_peu19516 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640149 |
| Solanaceae | Solanum chilense | 1 | SOLCI000213600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018687 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4924 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3362 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38350.v3.1 |